Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.SimpleReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001191/0.001191, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001452/0.001452, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.077/1.077, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1001/0.1001, allocations: 17.38 MB / 277.6 MB, free: 11.52 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.SimpleReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.SimpleReaction")
translateModel(Chemical.Obsolete.Examples.SimpleReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.SimpleReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.853e-06/1.853e-06, allocations: 0 / 300.7 MB, free: 1.82 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.468e-05/2.653e-05, allocations: 6.016 kB / 300.7 MB, free: 1.816 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.SimpleReaction): time 0.03806/0.03808, allocations: 33.85 MB / 334.5 MB, free: 2.719 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.008822/0.04691, allocations: 7.967 MB / 342.5 MB, free: 10.71 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.000771/0.04768, allocations: 15.88 kB / 342.5 MB, free: 10.7 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0005846/0.04826, allocations: 178.5 kB / 342.7 MB, free: 10.52 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00186/0.05012, allocations: 0.7132 MB / 343.4 MB, free: 9.805 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.002504/0.05262, allocations: 1.068 MB / 344.5 MB, free: 8.73 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001676/0.0543, allocations: 0.974 MB / 345.4 MB, free: 7.75 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0006612/0.05496, allocations: 448.5 kB / 345.9 MB, free: 7.309 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0007311/0.05569, allocations: 0.6278 MB / 346.5 MB, free: 6.68 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.000642/0.05634, allocations: 423 kB / 346.9 MB, free: 6.266 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001158/0.05645, allocations: 80 kB / 347 MB, free: 6.188 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.002103/0.05855, allocations: 0.85 MB / 347.8 MB, free: 5.336 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001892/0.05874, allocations: 203.3 kB / 348 MB, free: 5.137 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0002683/0.05901, allocations: 303.4 kB / 348.3 MB, free: 4.84 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.002939/0.06195, allocations: 1.626 MB / 350 MB, free: 3.207 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.902e-06/0.06196, allocations: 4 kB / 350 MB, free: 3.203 MB / 314.7 MB
Notification: Performance of FrontEnd: time 2.274e-06/0.06196, allocations: 0 / 350 MB, free: 3.203 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 1.876e-05/0.06198, allocations: 0 / 350 MB, free: 3.203 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 168
 * Number of variables: 168
Notification: Performance of Generate backend data structure: time 0.001493/0.06347, allocations: 1.095 MB / 351.1 MB, free: 2.078 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.965e-05/0.06351, allocations: 8.031 kB / 351.1 MB, free: 2.07 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0005286/0.06404, allocations: 231.9 kB / 351.3 MB, free: 1.844 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005238/0.06456, allocations: 361.1 kB / 351.6 MB, free: 1.469 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.606e-05/0.06466, allocations: 106 kB / 351.7 MB, free: 1.355 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 8.088e-05/0.06474, allocations: 68.38 kB / 351.8 MB, free: 1.289 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0006108/0.06535, allocations: 0.59 MB / 352.4 MB, free: 0.6758 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.516e-05/0.06537, allocations: 192 / 352.4 MB, free: 0.6758 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.886e-05/0.0654, allocations: 32.11 kB / 352.4 MB, free: 0.6445 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.259e-05/0.06542, allocations: 20 kB / 352.5 MB, free: 0.625 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0007898/0.06621, allocations: 456.8 kB / 352.9 MB, free: 184 kB / 314.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002082/0.06829, allocations: 1.547 MB / 354.4 MB, free: 14.59 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0007939/0.06908, allocations: 0.7731 MB / 355.2 MB, free: 13.79 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001582/0.06924, allocations: 142.8 kB / 355.4 MB, free: 13.65 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001781/0.07102, allocations: 1.381 MB / 356.7 MB, free: 12.25 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.914e-05/0.07105, allocations: 38.5 kB / 356.8 MB, free: 12.21 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=41): time 2.404e-06/0.07105, allocations: 0 / 356.8 MB, free: 12.21 MB / 330.7 MB
Notification: Performance of matching and sorting (n=46): time 0.001292/0.07234, allocations: 0.8344 MB / 357.6 MB, free: 11.34 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.542e-05/0.07238, allocations: 55.41 kB / 357.7 MB, free: 11.27 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002548/0.07263, allocations: 375 kB / 358 MB, free: 10.89 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 2.672e-05/0.07266, allocations: 33.7 kB / 358.1 MB, free: 10.85 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001529/0.07281, allocations: 348.6 kB / 358.4 MB, free: 10.51 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 9.306e-05/0.07291, allocations: 170.5 kB / 358.6 MB, free: 10.34 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001185/0.07303, allocations: 126.6 kB / 358.7 MB, free: 10.21 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001252/0.07315, allocations: 370.6 kB / 359.1 MB, free: 9.836 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 9.061e-05/0.07324, allocations: 68.8 kB / 359.1 MB, free: 9.77 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000228/0.07347, allocations: 309 kB / 359.4 MB, free: 9.367 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0006289/0.0741, allocations: 456.2 kB / 359.9 MB, free: 8.816 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.444e-06/0.07411, allocations: 4 kB / 359.9 MB, free: 8.812 MB / 330.7 MB
Notification: Performance of matching and sorting (n=83) (initialization): time 0.0004189/0.07453, allocations: 396.8 kB / 360.3 MB, free: 8.414 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.911e-05/0.07454, allocations: 8 kB / 360.3 MB, free: 8.406 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.127e-05/0.07456, allocations: 8 kB / 360.3 MB, free: 8.398 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.078e-05/0.07458, allocations: 12.81 kB / 360.3 MB, free: 8.387 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004314/0.07501, allocations: 219.7 kB / 360.5 MB, free: 8.172 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.383e-05/0.07502, allocations: 19.92 kB / 360.5 MB, free: 8.152 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001526/0.07517, allocations: 20 kB / 360.5 MB, free: 8.133 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.851e-05/0.07521, allocations: 32 kB / 360.6 MB, free: 8.102 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (83):
 * Single equations (assignments): 83
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001411/0.07535, allocations: 160.4 kB / 360.7 MB, free: 7.934 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.083e-05/0.0754, allocations: 47.95 kB / 360.8 MB, free: 7.887 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0004121/0.07582, allocations: 327.7 kB / 361.1 MB, free: 7.559 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.15e-06/0.07582, allocations: 4 kB / 361.1 MB, free: 7.555 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.084e-06/0.07582, allocations: 0 / 361.1 MB, free: 7.555 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.58e-06/0.07583, allocations: 0 / 361.1 MB, free: 7.555 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0004533/0.07628, allocations: 432.5 kB / 361.5 MB, free: 7.09 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.402e-06/0.07629, allocations: 3.984 kB / 361.5 MB, free: 7.086 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003258/0.07662, allocations: 160 kB / 361.7 MB, free: 6.93 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 6.432e-06/0.07662, allocations: 4 kB / 361.7 MB, free: 6.926 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.958e-05/0.07664, allocations: 12 kB / 361.7 MB, free: 6.914 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.619e-06/0.07665, allocations: 7.922 kB / 361.7 MB, free: 6.906 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.244e-06/0.07665, allocations: 7.938 kB / 361.7 MB, free: 6.898 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0004389/0.07709, allocations: 489.9 kB / 362.2 MB, free: 6.391 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 9.651e-05/0.07718, allocations: 71.59 kB / 362.3 MB, free: 6.32 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.706e-05/0.07722, allocations: 12 kB / 362.3 MB, free: 6.309 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 9.728e-05/0.07732, allocations: 8 kB / 362.3 MB, free: 6.301 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.789e-05/0.07739, allocations: 48.36 kB / 362.3 MB, free: 6.254 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.099e-05/0.07741, allocations: 16 kB / 362.3 MB, free: 6.238 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0001138/0.07752, allocations: 144.6 kB / 362.5 MB, free: 6.098 MB / 330.7 MB
Notification: Performance of sort global known variables: time 4e-08/0.07752, allocations: 0 / 362.5 MB, free: 6.098 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0007128/0.07823, allocations: 335.1 kB / 362.8 MB, free: 5.77 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 3 (solution.temperature,A.logn,B.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (53):
 * Single equations (assignments): 53
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.000634/0.07887, allocations: 447.1 kB / 363.3 MB, free: 5.324 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0003363/0.0792, allocations: 298.6 kB / 363.5 MB, free: 5.031 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.795e-05/0.07922, allocations: 12.5 kB / 363.6 MB, free: 5.02 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0001265/0.07935, allocations: 140.5 kB / 363.7 MB, free: 4.883 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004087/0.07976, allocations: 130 kB / 363.8 MB, free: 4.754 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001704/0.08146, allocations: 1.115 MB / 364.9 MB, free: 3.59 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 9.241e-05/0.08155, allocations: 133.9 kB / 365.1 MB, free: 3.441 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0002589/0.08181, allocations: 120.3 kB / 365.2 MB, free: 3.32 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002731/0.08209, allocations: 197.2 kB / 365.4 MB, free: 3.129 MB / 330.7 MB
Notification: Performance of SimCode: time 8.41e-07/0.08209, allocations: 0 / 365.4 MB, free: 3.129 MB / 330.7 MB
Notification: Performance of Templates: time 0.01534/0.09743, allocations: 11.69 MB / 377.1 MB, free: 7.527 MB / 346.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.SimpleReaction.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.SimpleReaction.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.SimpleReaction.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.SimpleReaction.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.SimpleReaction.sim & ./Chemical_Chemical.Obsolete.Examples.SimpleReaction -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.SimpleReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.229692322667688]