Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001333/0.001333, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001072/0.001072, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9848/0.9848, allocations: 177.1 MB / 203.8 MB, free: 5.473 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09752/0.09752, allocations: 17.39 MB / 277.6 MB, free: 11.52 MB / 266.7 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.964e-06/1.964e-06, allocations: 0 / 300.7 MB, free: 1.832 MB / 266.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 2.244e-05/2.441e-05, allocations: 5.734 kB / 300.7 MB, free: 1.828 MB / 266.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation): time 0.04568/0.0457, allocations: 49.38 MB / 350.1 MB, free: 3.102 MB / 314.7 MB Notification: Performance of NFInst.instExpressions: time 0.02775/0.07345, allocations: 26.22 MB / 376.3 MB, free: 8.777 MB / 346.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.003743/0.07719, allocations: 83.31 kB / 376.4 MB, free: 8.695 MB / 346.7 MB Notification: Performance of NFTyping.typeComponents: time 0.001955/0.07914, allocations: 0.9717 MB / 377.4 MB, free: 7.715 MB / 346.7 MB Notification: Performance of NFTyping.typeBindings: time 0.00679/0.08594, allocations: 3.291 MB / 380.6 MB, free: 4.398 MB / 346.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.008725/0.09466, allocations: 4.97 MB / 385.6 MB, free: 15.41 MB / 362.7 MB Notification: Performance of NFFlatten.flatten: time 0.02013/0.1148, allocations: 27.38 MB / 413 MB, free: 3.93 MB / 378.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0186/0.1334, allocations: 17.17 MB / 430.2 MB, free: 2.617 MB / 394.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.2788/0.4121, allocations: 22.89 MB / 453.1 MB, free: 49.17 MB / 410.8 MB Notification: Performance of NFSimplifyModel.simplify: time 0.02307/0.4352, allocations: 16.43 MB / 469.5 MB, free: 49.17 MB / 410.8 MB Notification: Performance of NFPackage.collectConstants: time 0.006483/0.4417, allocations: 3.132 MB / 472.6 MB, free: 49.17 MB / 410.8 MB Notification: Performance of NFFlatten.collectFunctions: time 0.01187/0.4536, allocations: 5.312 MB / 477.9 MB, free: 49.17 MB / 410.8 MB Notification: Performance of NFScalarize.scalarize: time 0.005965/0.4595, allocations: 7.156 MB / 485.1 MB, free: 49.17 MB / 410.8 MB Notification: Performance of NFVerifyModel.verify: time 0.01591/0.4754, allocations: 9.411 MB / 494.5 MB, free: 48.53 MB / 410.8 MB Notification: Performance of NFConvertDAE.convert: time 0.03713/0.5126, allocations: 27.24 MB / 0.5095 GB, free: 32.85 MB / 410.8 MB Notification: Performance of FrontEnd - DAE generated: time 7.274e-06/0.5126, allocations: 0 / 0.5095 GB, free: 32.85 MB / 410.8 MB Notification: Performance of FrontEnd: time 1.653e-06/0.5126, allocations: 4 kB / 0.5095 GB, free: 32.85 MB / 410.8 MB Notification: Performance of Transformations before backend: time 0.0009323/0.5135, allocations: 2.656 kB / 0.5095 GB, free: 32.85 MB / 410.8 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.03131/0.5448, allocations: 19.19 MB / 0.5283 GB, free: 14.69 MB / 410.8 MB Notification: Performance of prepare preOptimizeDAE: time 4.117e-05/0.5449, allocations: 8.031 kB / 0.5283 GB, free: 14.68 MB / 410.8 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.01257/0.5574, allocations: 6.248 MB / 0.5344 GB, free: 8.527 MB / 410.8 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0109/0.5683, allocations: 6.597 MB / 0.5408 GB, free: 2.387 MB / 410.8 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001006/0.5693, allocations: 3.057 MB / 0.5438 GB, free: 14.89 MB / 426.8 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.003106/0.5724, allocations: 1.519 MB / 0.5453 GB, free: 13.39 MB / 426.8 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.02341/0.5959, allocations: 17.57 MB / 0.5624 GB, free: 12.18 MB / 442.8 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0001971/0.5961, allocations: 10.94 kB / 0.5624 GB, free: 12.17 MB / 442.8 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001817/0.5979, allocations: 0.5863 MB / 0.563 GB, free: 11.59 MB / 442.8 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002017/0.5981, allocations: 367.9 kB / 0.5634 GB, free: 11.23 MB / 442.8 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.02111/0.6192, allocations: 15.27 MB / 0.5783 GB, free: 11.98 MB / 458.8 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.4015/1.021, allocations: 53.58 MB / 0.6306 GB, free: 97.57 MB / 474.9 MB Notification: Performance of preOpt comSubExp (simulation): time 0.5587/1.579, allocations: 299.2 MB / 0.9228 GB, free: 53.51 MB / 0.495 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.009912/1.589, allocations: 5.449 MB / 0.9281 GB, free: 48.22 MB / 0.495 GB Notification: Performance of preOpt evalFunc (simulation): time 0.04847/1.638, allocations: 27.91 MB / 0.9554 GB, free: 22.22 MB / 0.495 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.604e-05/1.638, allocations: 130.3 kB / 0.9555 GB, free: 22.09 MB / 0.495 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.01243/1.65, allocations: 5.735 MB / 0.9611 GB, free: 17.18 MB / 0.495 GB Notification: Performance of pre-optimization done (n=983): time 3.99e-05/1.65, allocations: 2.625 kB / 0.9611 GB, free: 17.18 MB / 0.495 GB Notification: Performance of matching and sorting (n=1117): time 0.4541/2.104, allocations: 67.85 MB / 1.027 GB, free: 126 MB / 0.495 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.112e-05/2.104, allocations: 169.1 kB / 1.028 GB, free: 125.9 MB / 0.495 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.006514/2.111, allocations: 7.588 MB / 1.035 GB, free: 124.4 MB / 0.495 GB Notification: Performance of collectPreVariables (initialization): time 0.002896/2.114, allocations: 209 kB / 1.035 GB, free: 124.3 MB / 0.495 GB Notification: Performance of collectInitialEqns (initialization): time 0.001721/2.116, allocations: 5.73 MB / 1.041 GB, free: 121.1 MB / 0.495 GB Notification: Performance of collectInitialBindings (initialization): time 0.003302/2.119, allocations: 4.025 MB / 1.045 GB, free: 118.2 MB / 0.495 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.003329/2.122, allocations: 2.786 MB / 1.047 GB, free: 116.4 MB / 0.495 GB Notification: Performance of setup shared object (initialization): time 2.636e-05/2.122, allocations: 305.1 kB / 1.048 GB, free: 116.1 MB / 0.495 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.003767/2.126, allocations: 2.95 MB / 1.051 GB, free: 113.4 MB / 0.495 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.004464/2.13, allocations: 7.18 MB / 1.058 GB, free: 104.7 MB / 0.495 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.009393/2.14, allocations: 12.11 MB / 1.069 GB, free: 91.73 MB / 0.495 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.245e-05/2.14, allocations: 46.56 kB / 1.069 GB, free: 91.69 MB / 0.495 GB Notification: Performance of matching and sorting (n=1861) (initialization): time 0.1822/2.322, allocations: 37 MB / 1.106 GB, free: 56.8 MB / 0.495 GB Notification: Performance of prepare postOptimizeDAE: time 7.762e-05/2.322, allocations: 68 kB / 1.106 GB, free: 56.74 MB / 0.495 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.000118/2.322, allocations: 144 kB / 1.106 GB, free: 56.6 MB / 0.495 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.2499/2.572, allocations: 46.1 MB / 1.151 GB, free: 125.9 MB / 0.495 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01368/2.586, allocations: 3.827 MB / 1.155 GB, free: 125.9 MB / 0.495 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.05347/2.639, allocations: 19.05 MB / 1.173 GB, free: 122.1 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.009152/2.648, allocations: 482.2 kB / 1.174 GB, free: 122.1 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.001294/2.65, allocations: 0.7042 MB / 1.174 GB, free: 122.1 MB / 0.495 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 661 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1813): * Single equations (assignments): 1810 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.004302/2.654, allocations: 1.019 MB / 1.175 GB, free: 122 MB / 0.495 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.00212/2.656, allocations: 0.923 MB / 1.176 GB, free: 122 MB / 0.495 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.09911/2.755, allocations: 24.21 MB / 1.2 GB, free: 119.3 MB / 0.495 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0001006/2.755, allocations: 119.8 kB / 1.2 GB, free: 119.3 MB / 0.495 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.332e-05/2.755, allocations: 18.91 kB / 1.2 GB, free: 119.3 MB / 0.495 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0002785/2.756, allocations: 63.67 kB / 1.2 GB, free: 119.2 MB / 0.495 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.1158/2.872, allocations: 32.99 MB / 1.232 GB, free: 104.2 MB / 0.495 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.144e-05/2.872, allocations: 7.984 kB / 1.232 GB, free: 104.2 MB / 0.495 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.008909/2.88, allocations: 2.456 MB / 1.235 GB, free: 101.9 MB / 0.495 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.04009/2.921, allocations: 15.22 MB / 1.25 GB, free: 86.95 MB / 0.495 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.002536/2.923, allocations: 415.5 kB / 1.25 GB, free: 86.55 MB / 0.495 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.03379/2.957, allocations: 11.39 MB / 1.261 GB, free: 75.12 MB / 0.495 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.176e-06/2.957, allocations: 7.844 kB / 1.261 GB, free: 75.12 MB / 0.495 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.1075/3.064, allocations: 28.14 MB / 1.289 GB, free: 47.15 MB / 0.495 GB Notification: Performance of postOpt removeConstants (simulation): time 0.006151/3.071, allocations: 1.394 MB / 1.29 GB, free: 46.27 MB / 0.495 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.001796/3.072, allocations: 291.8 kB / 1.29 GB, free: 45.99 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.005365/3.078, allocations: 259.9 kB / 1.29 GB, free: 45.73 MB / 0.495 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.003156/3.081, allocations: 1.171 MB / 1.292 GB, free: 44.56 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0009919/3.082, allocations: 342 kB / 1.292 GB, free: 44.23 MB / 0.495 GB Notification: Performance of sorting global known variables: time 0.004151/3.086, allocations: 3.779 MB / 1.296 GB, free: 40.84 MB / 0.495 GB Notification: Performance of sort global known variables: time 1.9e-07/3.086, allocations: 0 / 1.296 GB, free: 40.84 MB / 0.495 GB Notification: Performance of remove unused functions: time 0.01486/3.101, allocations: 5.234 MB / 1.301 GB, free: 35.75 MB / 0.495 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1222): * Single equations (assignments): 1219 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.002492/3.103, allocations: 1.414 MB / 1.302 GB, free: 34.73 MB / 0.495 GB Notification: Performance of simCode: created initialization part: time 0.02544/3.129, allocations: 10.1 MB / 1.312 GB, free: 25.25 MB / 0.495 GB Notification: Performance of simCode: created event and clocks part: time 0.0002476/3.129, allocations: 140.7 kB / 1.312 GB, free: 25.1 MB / 0.495 GB Notification: Performance of simCode: created simulation system equations: time 0.0113/3.14, allocations: 5.429 MB / 1.317 GB, free: 19.99 MB / 0.495 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.007129/3.147, allocations: 2.586 MB / 1.32 GB, free: 17.67 MB / 0.495 GB Error: Error parsing unit kDa: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.188/3.335, allocations: 28.06 MB / 1.347 GB, free: 124.2 MB / 0.495 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.002828/3.338, allocations: 3.486 MB / 1.351 GB, free: 123.7 MB / 0.495 GB Notification: Performance of simCode: alias equations: time 0.006206/3.344, allocations: 1.714 MB / 1.352 GB, free: 123.6 MB / 0.495 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.005434/3.35, allocations: 2.678 MB / 1.355 GB, free: 123.5 MB / 0.495 GB Notification: Performance of SimCode: time 1.723e-06/3.35, allocations: 0 / 1.355 GB, free: 123.5 MB / 0.495 GB Notification: Performance of Templates: time 0.4419/3.792, allocations: 311.1 MB / 1.659 GB, free: 43.88 MB / 0.5107 GB " [Timeout remaining time 656] make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.makefile [Timeout 660] (rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 12.75851948838681]