Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009629/0.0009629, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001011/0.001011, allocations: 181 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9469/0.9469, allocations: 177.1 MB / 203.8 MB, free: 5.504 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1001/0.1001, allocations: 17.39 MB / 277.6 MB, free: 11.55 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.GasSolubility_blood,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility_blood")
translateModel(Chemical.Obsolete.Examples.GasSolubility_blood,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility_blood") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.263e-06/1.263e-06, allocations: 0 / 300.7 MB, free: 1.906 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.215e-05/2.342e-05, allocations: 3.406 kB / 300.7 MB, free: 1.902 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.GasSolubility_blood): time 0.0062/0.006223, allocations: 6.851 MB / 307.5 MB, free: 13.36 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01576/0.02198, allocations: 19.49 MB / 327 MB, free: 9.969 MB / 298.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00103/0.02301, allocations: 27.75 kB / 327 MB, free: 9.941 MB / 298.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0009113/0.02393, allocations: 384.9 kB / 327.4 MB, free: 9.562 MB / 298.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003571/0.0275, allocations: 1.671 MB / 329.1 MB, free: 7.879 MB / 298.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005085/0.03258, allocations: 2.539 MB / 331.6 MB, free: 5.324 MB / 298.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001988/0.03457, allocations: 1.872 MB / 333.5 MB, free: 3.445 MB / 298.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.000742/0.03531, allocations: 0.813 MB / 334.3 MB, free: 2.602 MB / 298.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0009796/0.03629, allocations: 1.193 MB / 335.5 MB, free: 1.406 MB / 298.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0008017/0.03709, allocations: 0.7756 MB / 336.3 MB, free: 0.625 MB / 298.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.00017/0.03726, allocations: 152 kB / 336.4 MB, free: 488 kB / 298.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003885/0.04115, allocations: 2.055 MB / 338.5 MB, free: 14.42 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002336/0.04138, allocations: 374.8 kB / 338.8 MB, free: 14.05 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0004843/0.04187, allocations: 0.5691 MB / 339.4 MB, free: 13.48 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.006591/0.04846, allocations: 3.638 MB / 343 MB, free: 9.828 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.889e-06/0.04846, allocations: 0 / 343 MB, free: 9.828 MB / 314.7 MB
Notification: Performance of FrontEnd: time 9.02e-07/0.04846, allocations: 0 / 343 MB, free: 9.828 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 1.915e-05/0.04848, allocations: 4 kB / 343 MB, free: 9.824 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 314
 * Number of variables: 314
Notification: Performance of Generate backend data structure: time 0.002404/0.05089, allocations: 1.965 MB / 345 MB, free: 7.824 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.907e-05/0.05093, allocations: 16.03 kB / 345 MB, free: 7.809 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001094/0.05202, allocations: 0.6158 MB / 345.6 MB, free: 7.191 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000699/0.05272, allocations: 0.5514 MB / 346.2 MB, free: 6.613 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.082e-05/0.05277, allocations: 98.83 kB / 346.3 MB, free: 6.516 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001268/0.0529, allocations: 124.4 kB / 346.4 MB, free: 6.395 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001045/0.05394, allocations: 1.108 MB / 347.5 MB, free: 5.242 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.229e-05/0.05396, allocations: 4.172 kB / 347.5 MB, free: 5.238 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.292e-05/0.05404, allocations: 52.38 kB / 347.6 MB, free: 5.188 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.746e-05/0.05405, allocations: 35.94 kB / 347.6 MB, free: 5.152 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001065/0.05512, allocations: 1.005 MB / 348.6 MB, free: 4.129 MB / 314.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003755/0.05887, allocations: 3.001 MB / 351.6 MB, free: 1.07 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002641/0.06152, allocations: 1.924 MB / 353.5 MB, free: 15.14 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003416/0.06186, allocations: 266.7 kB / 353.8 MB, free: 14.88 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004244/0.0661, allocations: 2.447 MB / 356.2 MB, free: 12.41 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.236e-05/0.06613, allocations: 39.22 kB / 356.3 MB, free: 12.36 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=72): time 2.325e-06/0.06614, allocations: 0 / 356.3 MB, free: 12.36 MB / 330.7 MB
Notification: Performance of matching and sorting (n=89): time 0.008234/0.07437, allocations: 2.613 MB / 358.9 MB, free: 9.715 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.486e-05/0.07441, allocations: 68.28 kB / 359 MB, free: 9.633 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008627/0.07528, allocations: 0.8834 MB / 359.8 MB, free: 8.73 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 4.493e-05/0.07532, allocations: 37.7 kB / 359.9 MB, free: 8.688 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000348/0.07567, allocations: 0.6329 MB / 360.5 MB, free: 8.047 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002278/0.0759, allocations: 329.2 kB / 360.8 MB, free: 7.723 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003175/0.07622, allocations: 287.3 kB / 361.1 MB, free: 7.438 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001124/0.07633, allocations: 353.8 kB / 361.5 MB, free: 7.086 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002896/0.07662, allocations: 166.7 kB / 361.6 MB, free: 6.922 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005461/0.07716, allocations: 0.6604 MB / 362.3 MB, free: 6.051 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0009976/0.07816, allocations: 0.9705 MB / 363.3 MB, free: 4.859 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.979e-06/0.07817, allocations: 4 kB / 363.3 MB, free: 4.855 MB / 330.7 MB
Notification: Performance of matching and sorting (n=185) (initialization): time 0.002116/0.08029, allocations: 1.038 MB / 364.3 MB, free: 3.797 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.845e-05/0.08032, allocations: 15.94 kB / 364.3 MB, free: 3.781 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.184e-05/0.08034, allocations: 16 kB / 364.3 MB, free: 3.766 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.001579/0.08192, allocations: 337.5 kB / 364.7 MB, free: 3.43 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009093/0.08283, allocations: 383.4 kB / 365 MB, free: 3.055 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.003202/0.08603, allocations: 3.005 MB / 368 MB, free: 15.88 MB / 346.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006795/0.08671, allocations: 44 kB / 368.1 MB, free: 15.84 MB / 346.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001107/0.08682, allocations: 71.97 kB / 368.2 MB, free: 15.77 MB / 346.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 71
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (179):
 * Single equations (assignments): 177
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002997/0.08712, allocations: 204.2 kB / 368.4 MB, free: 15.56 MB / 346.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001457/0.08726, allocations: 87.86 kB / 368.4 MB, free: 15.47 MB / 346.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.001969/0.08923, allocations: 0.8408 MB / 369.3 MB, free: 14.62 MB / 346.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.997e-06/0.08924, allocations: 8 kB / 369.3 MB, free: 14.61 MB / 346.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.282e-06/0.08925, allocations: 8 kB / 369.3 MB, free: 14.61 MB / 346.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.035e-05/0.08926, allocations: 15.91 kB / 369.3 MB, free: 14.59 MB / 346.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0009842/0.09024, allocations: 0.7155 MB / 370 MB, free: 13.83 MB / 346.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.941e-06/0.09025, allocations: 0 / 370 MB, free: 13.83 MB / 346.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005323/0.09078, allocations: 195.8 kB / 370.2 MB, free: 13.64 MB / 346.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.001548/0.09233, allocations: 325.4 kB / 370.5 MB, free: 13.32 MB / 346.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.522e-05/0.09239, allocations: 31.92 kB / 370.6 MB, free: 13.29 MB / 346.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.002689/0.09508, allocations: 2.909 MB / 373.5 MB, free: 10.2 MB / 346.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.783e-06/0.09508, allocations: 0 / 373.5 MB, free: 10.2 MB / 346.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001938/0.09702, allocations: 0.9655 MB / 374.4 MB, free: 9.203 MB / 346.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001359/0.09716, allocations: 87.28 kB / 374.5 MB, free: 9.117 MB / 346.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001064/0.09726, allocations: 20 kB / 374.5 MB, free: 9.098 MB / 346.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003155/0.09758, allocations: 23.98 kB / 374.6 MB, free: 9.074 MB / 346.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001454/0.09773, allocations: 73.06 kB / 374.6 MB, free: 9.004 MB / 346.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.786e-05/0.09778, allocations: 35.98 kB / 374.7 MB, free: 8.969 MB / 346.7 MB
Notification: Performance of sorting global known variables: time 0.0004553/0.09824, allocations: 439.3 kB / 375.1 MB, free: 8.539 MB / 346.7 MB
Notification: Performance of sort global known variables: time 1.1e-07/0.09824, allocations: 0 / 375.1 MB, free: 8.539 MB / 346.7 MB
Notification: Performance of remove unused functions: time 0.002044/0.1003, allocations: 0.7947 MB / 375.9 MB, free: 7.742 MB / 346.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 5 (blood_plasma.temperature,CO2_unbound_plasma.logn,O2_unbound_plasma.logn,water.logn,others.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (93):
 * Single equations (assignments): 91
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001455/0.1017, allocations: 0.9727 MB / 376.9 MB, free: 6.762 MB / 346.7 MB
Notification: Performance of simCode: created initialization part: time 0.001261/0.103, allocations: 0.9196 MB / 377.8 MB, free: 5.816 MB / 346.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.801e-05/0.103, allocations: 13.81 kB / 377.8 MB, free: 5.805 MB / 346.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0005675/0.1036, allocations: 0.5381 MB / 378.3 MB, free: 5.246 MB / 346.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007774/0.1044, allocations: 258.7 kB / 378.6 MB, free: 5.012 MB / 346.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003291/0.1077, allocations: 1.97 MB / 380.6 MB, free: 2.984 MB / 346.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001759/0.1078, allocations: 209.5 kB / 380.8 MB, free: 2.754 MB / 346.7 MB
Notification: Performance of simCode: alias equations: time 0.0007422/0.1086, allocations: 246.9 kB / 381 MB, free: 2.523 MB / 346.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006496/0.1092, allocations: 356.6 kB / 381.4 MB, free: 2.172 MB / 346.7 MB
Notification: Performance of SimCode: time 1.102e-06/0.1092, allocations: 0 / 381.4 MB, free: 2.172 MB / 346.7 MB
Notification: Performance of Templates: time 0.04218/0.1514, allocations: 31.43 MB / 412.8 MB, free: 2.988 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.sim & ./Chemical_Chemical.Obsolete.Examples.GasSolubility_blood -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.5655836910009384]