Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.GasSolubility.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00149/0.00149, allocations: 80.81 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001666/0.001666, allocations: 177 kB / 23.35 MB, free: 1.137 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.06/1.06, allocations: 177.1 MB / 203.8 MB, free: 5.445 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09178/0.09178, allocations: 17.37 MB / 277.6 MB, free: 11.5 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.GasSolubility,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility")
translateModel(Chemical.Obsolete.Examples.GasSolubility,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.653e-06/1.653e-06, allocations: 0 / 300.6 MB, free: 1.809 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.842e-05/2.008e-05, allocations: 3.562 kB / 300.7 MB, free: 1.805 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.GasSolubility): time 0.008786/0.008807, allocations: 10.09 MB / 310.7 MB, free: 10.2 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02479/0.0336, allocations: 30.59 MB / 341.3 MB, free: 11.49 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001529/0.03513, allocations: 35.69 kB / 341.4 MB, free: 11.45 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001332/0.03646, allocations: 0.6238 MB / 342 MB, free: 10.82 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.005617/0.04208, allocations: 2.66 MB / 344.6 MB, free: 8.145 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.007775/0.04985, allocations: 4.099 MB / 348.7 MB, free: 4.02 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.003596/0.05345, allocations: 3.104 MB / 351.9 MB, free: 0.9023 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001676/0.05513, allocations: 1.433 MB / 353.3 MB, free: 15.41 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002449/0.05757, allocations: 2.044 MB / 355.3 MB, free: 13.36 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001616/0.05919, allocations: 1.329 MB / 356.7 MB, free: 12.03 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0004864/0.05968, allocations: 260 kB / 356.9 MB, free: 11.78 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006489/0.06617, allocations: 3.333 MB / 360.2 MB, free: 8.438 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0005557/0.06672, allocations: 0.6152 MB / 360.9 MB, free: 7.82 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001348/0.06807, allocations: 0.9822 MB / 361.8 MB, free: 6.836 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01166/0.07973, allocations: 5.953 MB / 367.8 MB, free: 0.8594 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.791e-06/0.07974, allocations: 0 / 367.8 MB, free: 0.8594 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.022e-06/0.07974, allocations: 0 / 367.8 MB, free: 0.8594 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 4.498e-05/0.07978, allocations: 0 / 367.8 MB, free: 0.8594 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 539
 * Number of variables: 539
Notification: Performance of Generate backend data structure: time 0.003943/0.08373, allocations: 3.159 MB / 371 MB, free: 13.65 MB / 346.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.775e-05/0.08376, allocations: 8.031 kB / 371 MB, free: 13.64 MB / 346.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001784/0.08555, allocations: 0.9265 MB / 371.9 MB, free: 12.71 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.00116/0.08671, allocations: 0.8436 MB / 372.7 MB, free: 11.84 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.961e-05/0.0868, allocations: 156.6 kB / 372.9 MB, free: 11.68 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002419/0.08704, allocations: 220.3 kB / 373.1 MB, free: 11.46 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001922/0.08896, allocations: 1.871 MB / 375 MB, free: 9.504 MB / 346.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 3.784e-05/0.089, allocations: 4.188 kB / 375 MB, free: 9.5 MB / 346.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001239/0.08912, allocations: 80.38 kB / 375.1 MB, free: 9.422 MB / 346.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.253e-05/0.08916, allocations: 55.94 kB / 375.1 MB, free: 9.367 MB / 346.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002116/0.09127, allocations: 1.663 MB / 376.8 MB, free: 7.66 MB / 346.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006664/0.09793, allocations: 4.999 MB / 381.8 MB, free: 2.543 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003428/0.1014, allocations: 3.271 MB / 385 MB, free: 15.25 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0004972/0.1019, allocations: 493.5 kB / 385.5 MB, free: 14.76 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.006/0.1079, allocations: 4.259 MB / 389.8 MB, free: 10.48 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.245e-05/0.1079, allocations: 43.88 kB / 389.8 MB, free: 10.43 MB / 362.7 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0003895/0.1083, allocations: 178.7 kB / 390 MB, free: 10.25 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=138): time 4.208e-06/0.1083, allocations: 0 / 390 MB, free: 10.25 MB / 362.7 MB
Notification: Performance of matching and sorting (n=170): time 0.0128/0.1211, allocations: 4.782 MB / 394.8 MB, free: 5.441 MB / 362.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.126e-05/0.1211, allocations: 77.39 kB / 394.9 MB, free: 5.352 MB / 362.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0009903/0.1221, allocations: 1.213 MB / 396.1 MB, free: 4.109 MB / 362.7 MB
Notification: Performance of collectPreVariables (initialization): time 7.865e-05/0.1222, allocations: 61.64 kB / 396.1 MB, free: 4.043 MB / 362.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0004035/0.1226, allocations: 0.946 MB / 397.1 MB, free: 3.086 MB / 362.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.000607/0.1232, allocations: 0.6158 MB / 397.7 MB, free: 2.465 MB / 362.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.000399/0.1236, allocations: 472.6 kB / 398.2 MB, free: 1.996 MB / 362.7 MB
Notification: Performance of setup shared object (initialization): time 6.279e-05/0.1237, allocations: 301.1 kB / 398.4 MB, free: 1.699 MB / 362.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003679/0.124, allocations: 296.3 kB / 398.7 MB, free: 1.406 MB / 362.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006818/0.1247, allocations: 1.1 MB / 399.8 MB, free: 15.94 MB / 378.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001272/0.126, allocations: 1.68 MB / 401.5 MB, free: 13.89 MB / 378.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.859e-06/0.126, allocations: 8 kB / 401.5 MB, free: 13.89 MB / 378.7 MB
Notification: Performance of matching and sorting (n=317) (initialization): time 0.002981/0.129, allocations: 1.811 MB / 403.3 MB, free: 12.05 MB / 378.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.596e-05/0.129, allocations: 16 kB / 403.4 MB, free: 12.04 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.225e-05/0.129, allocations: 24 kB / 403.4 MB, free: 12.01 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.002647/0.1317, allocations: 0.6594 MB / 404 MB, free: 11.34 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00114/0.1328, allocations: 0.6396 MB / 404.7 MB, free: 10.7 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.004973/0.1378, allocations: 6.009 MB / 410.7 MB, free: 4.355 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001048/0.1388, allocations: 84.03 kB / 410.8 MB, free: 4.273 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001533/0.139, allocations: 124 kB / 410.9 MB, free: 4.152 MB / 378.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 117
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (305):
 * Single equations (assignments): 301
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004666/0.1395, allocations: 267.8 kB / 411.1 MB, free: 3.879 MB / 378.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000494/0.1399, allocations: 147.8 kB / 411.3 MB, free: 3.734 MB / 378.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002945/0.1429, allocations: 1.589 MB / 412.9 MB, free: 2.133 MB / 378.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.718e-06/0.1429, allocations: 20 kB / 412.9 MB, free: 2.113 MB / 378.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.358e-06/0.1429, allocations: 7.984 kB / 412.9 MB, free: 2.105 MB / 378.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.24e-05/0.1429, allocations: 7.969 kB / 412.9 MB, free: 2.098 MB / 378.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0014/0.1443, allocations: 1.208 MB / 414.1 MB, free: 0.832 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.306e-06/0.1443, allocations: 0 / 414.1 MB, free: 0.832 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007557/0.1451, allocations: 387.8 kB / 414.5 MB, free: 464 kB / 378.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.002375/0.1475, allocations: 0.612 MB / 415.1 MB, free: 15.83 MB / 394.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001036/0.1476, allocations: 59.97 kB / 415.2 MB, free: 15.77 MB / 394.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.004659/0.1522, allocations: 5.842 MB / 421 MB, free: 9.586 MB / 394.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.675e-06/0.1522, allocations: 4 kB / 421 MB, free: 9.582 MB / 394.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003074/0.1553, allocations: 1.778 MB / 422.8 MB, free: 7.75 MB / 394.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002954/0.1556, allocations: 154.7 kB / 422.9 MB, free: 7.598 MB / 394.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001576/0.1557, allocations: 40 kB / 423 MB, free: 7.559 MB / 394.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004295/0.1562, allocations: 40 kB / 423 MB, free: 7.52 MB / 394.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002272/0.1564, allocations: 145.7 kB / 423.2 MB, free: 7.379 MB / 394.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.861e-05/0.1565, allocations: 59.97 kB / 423.2 MB, free: 7.32 MB / 394.7 MB
Notification: Performance of sorting global known variables: time 0.0005001/0.157, allocations: 0.5791 MB / 423.8 MB, free: 6.73 MB / 394.7 MB
Notification: Performance of sort global known variables: time 2e-07/0.157, allocations: 0 / 423.8 MB, free: 6.73 MB / 394.7 MB
Notification: Performance of remove unused functions: time 0.002787/0.1598, allocations: 1.321 MB / 425.1 MB, free: 5.406 MB / 394.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 9
 * Number of states: 9 (blood_plasma.temperature,red_cells.temperature,CO2_unbound_plasma.logn,O2_unbound_plasma.logn,CO2_unbound_erythrocyte.logn,O2_unbound_erythrocyte_NIST.logn,water_plasma.logn,water.logn,water_plasma1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (183):
 * Single equations (assignments): 179
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.002406/0.1622, allocations: 1.55 MB / 426.7 MB, free: 3.855 MB / 394.7 MB
Notification: Performance of simCode: created initialization part: time 0.001955/0.1641, allocations: 1.699 MB / 428.4 MB, free: 2.105 MB / 394.7 MB
Notification: Performance of simCode: created event and clocks part: time 4.496e-05/0.1642, allocations: 27.84 kB / 428.4 MB, free: 2.074 MB / 394.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0008622/0.1651, allocations: 1.05 MB / 429.5 MB, free: 0.9766 MB / 394.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0009877/0.166, allocations: 409.7 kB / 429.9 MB, free: 0.5977 MB / 394.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004426/0.1705, allocations: 3.254 MB / 433.1 MB, free: 13.27 MB / 410.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002498/0.1707, allocations: 337.5 kB / 433.4 MB, free: 12.91 MB / 410.7 MB
Notification: Performance of simCode: alias equations: time 0.001078/0.1718, allocations: 430.3 kB / 433.9 MB, free: 12.5 MB / 410.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0008852/0.1727, allocations: 0.5473 MB / 434.4 MB, free: 11.95 MB / 410.7 MB
Notification: Performance of SimCode: time 1.383e-06/0.1727, allocations: 0 / 434.4 MB, free: 11.95 MB / 410.7 MB
Notification: Performance of Templates: time 0.1598/0.3325, allocations: 52.14 MB / 486.5 MB, free: 102.4 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.GasSolubility.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.GasSolubility.sim & ./Chemical_Chemical.Obsolete.Examples.GasSolubility -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.GasSolubility.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.5496246800757945]