Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009607/0.0009607, allocations: 80.88 kB / 19.94 MB, free: 4.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009691/0.0009691, allocations: 177.3 kB / 23.36 MB, free: 1.137 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9654/0.9654, allocations: 177.1 MB / 203.8 MB, free: 5.473 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09199/0.09199, allocations: 17.38 MB / 277.6 MB, free: 11.53 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.493e-06/1.493e-06, allocations: 0 / 300.7 MB, free: 1.832 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 9.788e-06/1.128e-05, allocations: 3.734 kB / 300.7 MB, free: 1.828 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02905/0.02906, allocations: 32.77 MB / 333.4 MB, free: 3.812 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005331/0.03439, allocations: 6.29 MB / 339.7 MB, free: 13.5 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001763/0.03457, allocations: 11.88 kB / 339.7 MB, free: 13.48 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0003882/0.03496, allocations: 150.8 kB / 339.9 MB, free: 13.34 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0004779/0.03543, allocations: 269.8 kB / 340.1 MB, free: 13.07 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001647/0.03708, allocations: 1.001 MB / 341.2 MB, free: 12.06 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005206/0.0376, allocations: 0.533 MB / 341.7 MB, free: 11.53 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002292/0.03783, allocations: 169.1 kB / 341.8 MB, free: 11.36 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002622/0.03809, allocations: 331.3 kB / 342.2 MB, free: 11.03 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002658/0.03836, allocations: 219.5 kB / 342.4 MB, free: 10.82 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.005e-05/0.0384, allocations: 28 kB / 342.4 MB, free: 10.79 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.000745/0.03914, allocations: 0.5458 MB / 343 MB, free: 10.24 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 8.534e-05/0.03923, allocations: 95.66 kB / 343.1 MB, free: 10.15 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001051/0.03933, allocations: 147.6 kB / 343.2 MB, free: 10 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.0008983/0.04023, allocations: 1.035 MB / 344.2 MB, free: 8.965 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.377e-06/0.04024, allocations: 0 / 344.2 MB, free: 8.965 MB / 314.7 MB
Notification: Performance of FrontEnd: time 9.81e-07/0.04024, allocations: 0 / 344.2 MB, free: 8.965 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 5.3e-06/0.04024, allocations: 0 / 344.2 MB, free: 8.965 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0006614/0.0409, allocations: 0.6935 MB / 344.9 MB, free: 8.246 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.676e-05/0.04094, allocations: 12.03 kB / 344.9 MB, free: 8.234 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003728/0.04131, allocations: 183.8 kB / 345.1 MB, free: 8.055 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003201/0.04163, allocations: 301.6 kB / 345.4 MB, free: 7.734 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.594e-05/0.04165, allocations: 21.03 kB / 345.4 MB, free: 7.715 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.109e-05/0.04168, allocations: 32.36 kB / 345.5 MB, free: 7.684 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003112/0.04199, allocations: 354.8 kB / 345.8 MB, free: 7.301 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.013e-05/0.042, allocations: 3.938 kB / 345.8 MB, free: 7.297 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.41e-05/0.04203, allocations: 12 kB / 345.8 MB, free: 7.285 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.384e-06/0.04203, allocations: 8 kB / 345.8 MB, free: 7.277 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003343/0.04237, allocations: 336 kB / 346.2 MB, free: 6.945 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001155/0.04352, allocations: 1.447 MB / 347.6 MB, free: 5.438 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001446/0.04367, allocations: 133.1 kB / 347.7 MB, free: 5.297 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 5.203e-05/0.04372, allocations: 40.84 kB / 347.8 MB, free: 5.254 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.0009916/0.04471, allocations: 0.9039 MB / 348.7 MB, free: 4.336 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.997e-05/0.04473, allocations: 34.5 kB / 348.7 MB, free: 4.293 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=9): time 9.52e-07/0.04473, allocations: 4 kB / 348.7 MB, free: 4.289 MB / 314.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0001732/0.0449, allocations: 133.5 kB / 348.8 MB, free: 4.152 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.492e-05/0.04493, allocations: 55.39 kB / 348.9 MB, free: 4.086 MB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002018/0.04513, allocations: 359.1 kB / 349.3 MB, free: 3.723 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.256e-05/0.04514, allocations: 25.7 kB / 349.3 MB, free: 3.691 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 9.38e-05/0.04524, allocations: 240.2 kB / 349.5 MB, free: 3.453 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.107e-05/0.04526, allocations: 39.67 kB / 349.6 MB, free: 3.414 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.719e-05/0.04533, allocations: 77.64 kB / 349.6 MB, free: 3.332 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 8.634e-05/0.04541, allocations: 354.8 kB / 350 MB, free: 2.977 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.035e-05/0.04545, allocations: 26.81 kB / 350 MB, free: 2.949 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001312/0.04558, allocations: 254.1 kB / 350.2 MB, free: 2.594 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002244/0.04581, allocations: 334 kB / 350.6 MB, free: 2.156 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.178e-06/0.04581, allocations: 4 kB / 350.6 MB, free: 2.152 MB / 314.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.000247/0.04606, allocations: 257.5 kB / 350.8 MB, free: 1.891 MB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.35e-05/0.04607, allocations: 8 kB / 350.8 MB, free: 1.883 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.348e-06/0.04608, allocations: 12.83 kB / 350.9 MB, free: 1.871 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.684e-05/0.0461, allocations: 12 kB / 350.9 MB, free: 1.859 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002056/0.0463, allocations: 99.83 kB / 351 MB, free: 1.762 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 8.906e-06/0.04631, allocations: 15.94 kB / 351 MB, free: 1.746 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001156/0.04643, allocations: 35.73 kB / 351 MB, free: 1.711 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.599e-05/0.04645, allocations: 27.98 kB / 351 MB, free: 1.684 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 8.47e-05/0.04654, allocations: 148.4 kB / 351.2 MB, free: 1.527 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.97e-05/0.04657, allocations: 15.98 kB / 351.2 MB, free: 1.512 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002634/0.04683, allocations: 230 kB / 351.4 MB, free: 1.258 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.415e-06/0.04683, allocations: 0 / 351.4 MB, free: 1.258 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.363e-06/0.04684, allocations: 0 / 351.4 MB, free: 1.258 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.765e-06/0.04684, allocations: 0 / 351.4 MB, free: 1.258 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002341/0.04707, allocations: 413.3 kB / 351.8 MB, free: 0.8242 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.072e-06/0.04707, allocations: 0 / 351.8 MB, free: 0.8242 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 7.344e-06/0.04708, allocations: 4 kB / 351.8 MB, free: 0.8203 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.254e-06/0.04708, allocations: 4 kB / 351.8 MB, free: 0.8164 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.256e-06/0.04709, allocations: 4.062 kB / 351.8 MB, free: 0.8125 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.52e-07/0.04709, allocations: 0 / 351.8 MB, free: 0.8125 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.81e-07/0.04709, allocations: 0 / 351.8 MB, free: 0.8125 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 5.651e-05/0.04715, allocations: 78.7 kB / 351.9 MB, free: 0.7148 MB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.52e-05/0.04717, allocations: 27.75 kB / 351.9 MB, free: 0.6875 MB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.463e-05/0.04719, allocations: 3.953 kB / 351.9 MB, free: 0.6836 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.753e-05/0.04723, allocations: 7.984 kB / 352 MB, free: 0.6758 MB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 8.596e-06/0.04724, allocations: 0 / 352 MB, free: 0.6758 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.124e-06/0.04724, allocations: 0 / 352 MB, free: 0.6758 MB / 314.7 MB
Notification: Performance of sorting global known variables: time 0.0001158/0.04736, allocations: 168.6 kB / 352.1 MB, free: 0.5078 MB / 314.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.04736, allocations: 0 / 352.1 MB, free: 0.5078 MB / 314.7 MB
Notification: Performance of remove unused functions: time 0.0002996/0.04766, allocations: 191.3 kB / 352.3 MB, free: 328 kB / 314.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003331/0.04799, allocations: 291.7 kB / 352.6 MB, free: 28 kB / 314.7 MB
Notification: Performance of simCode: created initialization part: time 0.000163/0.04815, allocations: 121.6 kB / 352.7 MB, free: 15.9 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 9.197e-06/0.04816, allocations: 4 kB / 352.7 MB, free: 15.9 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 6.052e-06/0.04817, allocations: 8.859 kB / 352.7 MB, free: 15.89 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002266/0.0484, allocations: 90.03 kB / 352.8 MB, free: 15.8 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0008574/0.04925, allocations: 0.5457 MB / 353.4 MB, free: 15.23 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.642e-05/0.0493, allocations: 92.61 kB / 353.4 MB, free: 15.12 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.000154/0.04945, allocations: 82.83 kB / 353.5 MB, free: 15.04 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001393/0.04959, allocations: 123.3 kB / 353.6 MB, free: 14.92 MB / 330.7 MB
Notification: Performance of SimCode: time 1.012e-06/0.04959, allocations: 4 kB / 353.7 MB, free: 14.92 MB / 330.7 MB
Notification: Performance of Templates: time 0.008048/0.05764, allocations: 7.179 MB / 360.8 MB, free: 7.797 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.8706152313388884]