Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001089/0.001089, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001243/0.001243, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.031/1.031, allocations: 177.1 MB / 203.8 MB, free: 5.48 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.06953/0.06953, allocations: 12.76 MB / 273 MB, free: 168 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.TwoConcentrationCompartments,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments")
translateModel(Bodylight.Chemical.Examples.TwoConcentrationCompartments,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.523e-06/1.523e-06, allocations: 0 / 293.9 MB, free: 11.96 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.312e-05/2.465e-05, allocations: 2.312 kB / 293.9 MB, free: 11.96 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.TwoConcentrationCompartments): time 0.004409/0.004433, allocations: 3.783 MB / 297.7 MB, free: 9.422 MB / 266.7 MB
Notification: Performance of NFInst.instExpressions: time 0.004805/0.009238, allocations: 3.084 MB / 300.8 MB, free: 7.461 MB / 266.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002814/0.009519, allocations: 18.53 kB / 300.8 MB, free: 7.449 MB / 266.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0002251/0.009744, allocations: 64.67 kB / 300.9 MB, free: 7.41 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Hydraulic.mo:1482:17-1484:29:writable] Warning: In relation resistor.Resistance == 0.0, == on Real operands is deprecated in non-function contexts.
Notification: Performance of NFTyping.typeBindings: time 0.001587/0.01133, allocations: 488.1 kB / 301.4 MB, free: 7.129 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001239/0.01257, allocations: 0.5043 MB / 301.9 MB, free: 6.879 MB / 266.7 MB
Notification: Performance of NFFlatten.flatten: time 0.003352/0.01592, allocations: 5.105 MB / 307 MB, free: 4.043 MB / 266.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001921/0.01611, allocations: 79.34 kB / 307 MB, free: 3.992 MB / 266.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002883/0.019, allocations: 1.922 MB / 309 MB, free: 2.078 MB / 266.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002348/0.02135, allocations: 1.666 MB / 310.6 MB, free: 420 kB / 266.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0009134/0.02226, allocations: 292 kB / 310.9 MB, free: 128 kB / 266.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.000433/0.02269, allocations: 292 kB / 311.2 MB, free: 15.84 MB / 282.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006457/0.02334, allocations: 0.996 MB / 312.2 MB, free: 14.84 MB / 282.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001311/0.02465, allocations: 0.9319 MB / 313.1 MB, free: 13.91 MB / 282.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.003381/0.02803, allocations: 2.635 MB / 315.8 MB, free: 11.27 MB / 282.7 MB
Notification: Performance of FrontEnd - DAE generated: time 7.744e-06/0.02804, allocations: 0 / 315.8 MB, free: 11.27 MB / 282.7 MB
Notification: Performance of FrontEnd: time 2.073e-06/0.02804, allocations: 0 / 315.8 MB, free: 11.27 MB / 282.7 MB
Notification: Performance of Transformations before backend: time 5.65e-05/0.0281, allocations: 0 / 315.8 MB, free: 11.27 MB / 282.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 164
 * Number of variables: 164
Notification: Performance of Generate backend data structure: time 0.008569/0.03667, allocations: 3.47 MB / 319.2 MB, free: 7.758 MB / 282.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.637e-05/0.03671, allocations: 11.98 kB / 319.2 MB, free: 7.746 MB / 282.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000495/0.03721, allocations: 256.7 kB / 319.5 MB, free: 7.496 MB / 282.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001145/0.03835, allocations: 0.6663 MB / 320.2 MB, free: 6.797 MB / 282.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001137/0.03949, allocations: 2.824 MB / 323 MB, free: 3.336 MB / 282.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004285/0.03992, allocations: 152.1 kB / 323.1 MB, free: 3.188 MB / 282.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00197/0.04189, allocations: 1.391 MB / 324.5 MB, free: 1.77 MB / 282.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.525e-05/0.04191, allocations: 0 / 324.5 MB, free: 1.77 MB / 282.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001821/0.04209, allocations: 28 kB / 324.6 MB, free: 1.742 MB / 282.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.385e-05/0.04211, allocations: 16 kB / 324.6 MB, free: 1.727 MB / 282.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009969/0.04311, allocations: 0.5387 MB / 325.1 MB, free: 1.188 MB / 282.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01032/0.05342, allocations: 3.809 MB / 328.9 MB, free: 13.36 MB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001053/0.05448, allocations: 0.6573 MB / 329.6 MB, free: 12.68 MB / 298.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0008337/0.05531, allocations: 0.6023 MB / 330.2 MB, free: 12.07 MB / 298.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.0002543/0.05556, allocations: 21 kB / 330.2 MB, free: 12.05 MB / 298.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00136/0.05692, allocations: 1.255 MB / 331.5 MB, free: 10.77 MB / 298.7 MB
Notification: Performance of pre-optimization done (n=123): time 3.958e-06/0.05693, allocations: 0 / 331.5 MB, free: 10.77 MB / 298.7 MB
Notification: Performance of matching and sorting (n=123): time 0.003297/0.06023, allocations: 1.739 MB / 333.2 MB, free: 9.016 MB / 298.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.077e-05/0.06028, allocations: 94.11 kB / 333.3 MB, free: 8.906 MB / 298.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003755/0.06065, allocations: 0.5233 MB / 333.8 MB, free: 8.371 MB / 298.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0002322/0.06088, allocations: 61.7 kB / 333.9 MB, free: 8.305 MB / 298.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000199/0.06108, allocations: 236.6 kB / 334.1 MB, free: 8.066 MB / 298.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0005098/0.06159, allocations: 0.5656 MB / 334.7 MB, free: 7.496 MB / 298.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0007095/0.0623, allocations: 327.4 kB / 335 MB, free: 7.172 MB / 298.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001068/0.06241, allocations: 361.8 kB / 335.3 MB, free: 6.812 MB / 298.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009562/0.06337, allocations: 0.5707 MB / 335.9 MB, free: 6.234 MB / 298.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009747/0.06434, allocations: 0.6958 MB / 336.6 MB, free: 5.52 MB / 298.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.002869/0.06721, allocations: 1.963 MB / 338.6 MB, free: 3.531 MB / 298.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.093e-06/0.06722, allocations: 4 kB / 338.6 MB, free: 3.527 MB / 298.7 MB
Notification: Performance of matching and sorting (n=237) (initialization): time 0.002712/0.06993, allocations: 1.522 MB / 340.1 MB, free: 1.988 MB / 298.7 MB
Notification: Performance of prepare postOptimizeDAE: time 4.428e-05/0.06997, allocations: 37.7 kB / 340.1 MB, free: 1.945 MB / 298.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.013e-05/0.06998, allocations: 0 / 340.1 MB, free: 1.945 MB / 298.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.466e-05/0.07001, allocations: 12 kB / 340.1 MB, free: 1.934 MB / 298.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03567/0.1057, allocations: 5.292 MB / 345.4 MB, free: 12.63 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.691e-05/0.1057, allocations: 15.98 kB / 345.4 MB, free: 12.62 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.002714/0.1084, allocations: 242.9 kB / 345.7 MB, free: 12.38 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003976/0.1088, allocations: 40 kB / 345.7 MB, free: 12.34 MB / 314.7 MB
Warning: Assuming fixed start value for the following 1 variables:
         inertia.q_in.q:VARIABLE(flow=true start = advectionStream.SolutionFlow unit = \"m3/s\" fixed = true nominal = 1.6666666666666667e-8 )  \"Volume flow\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 6
 * Number of states: 0 ()
 * Number of discrete variables: 5 (pulse.count,$PRE.pulse.count,pulse.T_start,$PRE.pulse.T_start,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (236):
 * Single equations (assignments): 235
 * Array equations: 0
 * Algorithm blocks: 1
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0009469/0.1098, allocations: 202.3 kB / 345.9 MB, free: 12.13 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004215/0.1102, allocations: 99.86 kB / 346 MB, free: 12.04 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002316/0.1125, allocations: 1.601 MB / 347.6 MB, free: 10.42 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.07e-05/0.1125, allocations: 12 kB / 347.6 MB, free: 10.41 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.436e-06/0.1125, allocations: 0 / 347.6 MB, free: 10.41 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.11e-05/0.1125, allocations: 11.91 kB / 347.6 MB, free: 10.39 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002189/0.1147, allocations: 1.376 MB / 349 MB, free: 8.996 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.552e-06/0.1147, allocations: 4 kB / 349 MB, free: 8.992 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.03795/0.1527, allocations: 5.249 MB / 354.3 MB, free: 3.738 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 1.153e-05/0.1527, allocations: 8 kB / 354.3 MB, free: 3.73 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.001011/0.1537, allocations: 75.92 kB / 354.4 MB, free: 3.656 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.438e-06/0.1537, allocations: 7.984 kB / 354.4 MB, free: 3.648 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.036e-06/0.1537, allocations: 4 kB / 354.4 MB, free: 3.645 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003537/0.1572, allocations: 2.186 MB / 356.6 MB, free: 1.438 MB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0008619/0.1581, allocations: 278.8 kB / 356.8 MB, free: 1.164 MB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003741/0.1585, allocations: 71.94 kB / 356.9 MB, free: 1.094 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001639/0.1601, allocations: 140 kB / 357 MB, free: 0.957 MB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004228/0.1605, allocations: 136.7 kB / 357.2 MB, free: 0.8203 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001554/0.1607, allocations: 27.97 kB / 357.2 MB, free: 0.793 MB / 314.7 MB
Notification: Performance of sorting global known variables: time 0.0002197/0.1609, allocations: 228.6 kB / 357.4 MB, free: 0.5703 MB / 314.7 MB
Notification: Performance of sort global known variables: time 4e-08/0.1609, allocations: 3.938 kB / 357.4 MB, free: 0.5664 MB / 314.7 MB
Notification: Performance of remove unused functions: time 0.00136/0.1623, allocations: 0.6171 MB / 358 MB, free: 15.95 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 103 (substance.state,substance1.state,advectionStream.c[2],advectionStream.c[3],advectionStream.c[4],advectionStream.c[5],advectionStream.c[6],advectionStream.c[7],advectionStream.c[8],advectionStream.c[9],advectionStream.c[10],advectionStream.c[11],advectionStream.c[12],advectionStream.c[13],advectionStream.c[14],advectionStream.c[15],advectionStream.c[16],advectionStream.c[17],advectionStream.c[18],advectionStream.c[19],advectionStream.c[20],advectionStream.c[21],advectionStream.c[22],advectionStream.c[23],advectionStream.c[24],advectionStream.c[25],advectionStream.c[26],advectionStream.c[27],advectionStream.c[28],advectionStream.c[29],advectionStream.c[30],advectionStream.c[31],advectionStream.c[32],advectionStream.c[33],advectionStream.c[34],advectionStream.c[35],advectionStream.c[36],advectionStream.c[37],advectionStream.c[38],advectionStream.c[39],advectionStream.c[40],advectionStream.c[41],advectionStream.c[42],advectionStream.c[43],advectionStream.c[44],advectionStream.c[45],advectionStream.c[46],advectionStream.c[47],advectionStream.c[48],advectionStream.c[49],advectionStream.c[50],advectionStream.c[51],advectionStream.c[52],advectionStream.c[53],advectionStream.c[54],advectionStream.c[55],advectionStream.c[56],advectionStream.c[57],advectionStream.c[58],advectionStream.c[59],advectionStream.c[60],advectionStream.c[61],advectionStream.c[62],advectionStream.c[63],advectionStream.c[64],advectionStream.c[65],advectionStream.c[66],advectionStream.c[67],advectionStream.c[68],advectionStream.c[69],advectionStream.c[70],advectionStream.c[71],advectionStream.c[72],advectionStream.c[73],advectionStream.c[74],advectionStream.c[75],advectionStream.c[76],advectionStream.c[77],advectionStream.c[78],advectionStream.c[79],advectionStream.c[80],advectionStream.c[81],advectionStream.c[82],advectionStream.c[83],advectionStream.c[84],advectionStream.c[85],advectionStream.c[86],advectionStream.c[87],advectionStream.c[88],advectionStream.c[89],advectionStream.c[90],advectionStream.c[91],advectionStream.c[92],advectionStream.c[93],advectionStream.c[94],advectionStream.c[95],advectionStream.c[96],advectionStream.c[97],advectionStream.c[98],advectionStream.c[99],elasticVessel.volume,elasticVessel1.volume,inertia.q_in.q)
 * Number of discrete variables: 3 ($whenCondition1,pulse.T_start,pulse.count)
 * Number of discrete states: 1 (pulse.count)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (123):
 * Single equations (assignments): 121
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 2
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003897/0.1627, allocations: 180.9 kB / 358.2 MB, free: 15.76 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.002588/0.1652, allocations: 1.453 MB / 359.7 MB, free: 14.29 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.791e-05/0.1653, allocations: 7.938 kB / 359.7 MB, free: 14.28 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.001159/0.1664, allocations: 0.7114 MB / 360.4 MB, free: 13.57 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001295/0.1677, allocations: 0.5645 MB / 360.9 MB, free: 13.03 MB / 330.7 MB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005123/0.1728, allocations: 4.012 MB / 365 MB, free: 8.965 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001882/0.173, allocations: 279.2 kB / 365.2 MB, free: 8.668 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.002842/0.1759, allocations: 333.2 kB / 365.6 MB, free: 8.34 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.002126/0.178, allocations: 495 kB / 366 MB, free: 7.848 MB / 330.7 MB
Notification: Performance of SimCode: time 2.585e-06/0.178, allocations: 0 / 366 MB, free: 7.848 MB / 330.7 MB
Notification: Performance of Templates: time 0.05593/0.2339, allocations: 46.4 MB / 412.4 MB, free: 9.996 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.sim & ./Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.12373411282897]