Environment - simulationEnvironment: startTime=0 stopTime=1.3 tolerance=1e-06 numberOfIntervals=2500 stepSize=0.00052 Regular simulation: ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Develop.Hemoglobin_titration -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS LOG_STDOUT | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used. LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[2].state, has value: -1.74645e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[2].q_out.conc, has value: -1.74645e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[3].state, has value: -1.74645e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[3].q_out.conc, has value: -1.74645e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[4].state, has value: -1.74645e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[4].q_out.conc, has value: -1.74645e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[1].products[1].conc, has value: -3.69085e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[2].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[2].products[1].conc, has value: -4.97601e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[3].products[1].conc, has value: -4.97601e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.carboxylation[4].products[1].conc, has value: -6.61744e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[1].state, has value: -3.69085e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[2].state, has value: -4.97601e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[3].state, has value: -4.97601e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.NHCOO[4].state, has value: -6.61744e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.R.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.oxygenation, has value: -2.10026e-25" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.T.carboxylation[2].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[2].products[1].conc, has value: -4.25918e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.T.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[3].products[1].conc, has value: -4.25918e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.T.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[4].products[1].conc, has value: -4.87974e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.T.NHCOO[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[2].state, has value: -4.25918e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.T.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[3].state, has value: -4.25918e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((deoxyhemoglobin.T.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[4].state, has value: -4.87974e-24" LOG_SUCCESS | info | The initialization finished successfully without homotopy method. LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000520 | | | | ((deoxyhemoglobin.R.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[1].state, has value: -3.23117e-27" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000520 | | | | ((deoxyhemoglobin.R.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.R.OxyHm[1].q_out.conc, has value: -3.23117e-24" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.001560 | | | | ((deoxyhemoglobin.T.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.carboxylation[1].products[1].conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.001560 | | | | ((deoxyhemoglobin.T.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.NHCOO[1].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[1].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[1].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[2].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[2].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[3].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[3].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[4].state, has value: -2.1684e-19" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.OxyHm[4].q_out.conc, has value: -2.1684e-16" LOG_ASSERT | info | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.003640 | | | | ((deoxyhemoglobin.T.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= deoxyhemoglobin.T.oxygenation, has value: -8.67362e-19" LOG_STATS | info | gbode (single-rate integration): radauIIA3 LOG_STATS | info | ### STATISTICS ### | | | | | timer | | | | | | 0s reading init.xml | | | | | | 0s reading info.xml | | | | | | 8.9178e-05s [ 0.1%] pre-initialization | | | | | | 0.000830525s [ 0.6%] initialization | | | | | | 0s [ 0.0%] steps | | | | | | 0s [ 0.0%] solver (excl. callbacks) | | | | | | 3.567e-06s [ 0.0%] creating output-file | | | | | | 0s [ 0.0%] event-handling | | | | | | 0s [ 0.0%] overhead | | | | | | 0.133199s [ 99.3%] simulation | | | | | | 0.134122s [100.0%] total | | | | | events | | | | | | 0 state events | | | | | | 0 time events | | | | | solver: gbode | | | | | | 16 steps taken | | | | | | 50 calls of functionODE | | | | | | 1 evaluations of jacobian | | | | | | 0 error test failures | | | | | | 0 convergence test failures | | | | | | 0s time of jacobian evaluation LOG_SUCCESS | info | The simulation finished successfully.