Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001051/0.001051, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001297/0.001297, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.137/1.137, allocations: 177.1 MB / 203.8 MB, free: 5.48 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.06646/0.06646, allocations: 12.76 MB / 273 MB, free: 168 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.993e-06/1.993e-06, allocations: 0 / 294 MB, free: 11.95 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.942e-05/3.141e-05, allocations: 2.312 kB / 294 MB, free: 11.94 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.006286/0.006317, allocations: 5.797 MB / 299.8 MB, free: 8.039 MB / 266.7 MB
Notification: Performance of NFInst.instExpressions: time 0.007929/0.01425, allocations: 5.805 MB / 305.6 MB, free: 4.348 MB / 266.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0009585/0.0152, allocations: 45.16 kB / 305.6 MB, free: 4.32 MB / 266.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004559/0.01566, allocations: 183.6 kB / 305.8 MB, free: 4.172 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.002987/0.01865, allocations: 1.007 MB / 306.8 MB, free: 3.418 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.006785/0.02543, allocations: 0.9949 MB / 307.8 MB, free: 2.707 MB / 266.7 MB
Notification: Performance of NFFlatten.flatten: time 0.006979/0.03241, allocations: 3.24 MB / 311 MB, free: 15.99 MB / 282.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001386/0.0338, allocations: 0.5901 MB / 311.6 MB, free: 15.36 MB / 282.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.01012/0.04392, allocations: 1.641 MB / 313.3 MB, free: 13.72 MB / 282.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.005981/0.0499, allocations: 1.492 MB / 314.7 MB, free: 12.22 MB / 282.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0008396/0.05074, allocations: 168 kB / 314.9 MB, free: 12.06 MB / 282.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0008666/0.05161, allocations: 184 kB / 315.1 MB, free: 11.88 MB / 282.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.003655/0.05526, allocations: 0.6772 MB / 315.8 MB, free: 11.2 MB / 282.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002247/0.05751, allocations: 0.8764 MB / 316.6 MB, free: 10.32 MB / 282.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.009694/0.06721, allocations: 2.535 MB / 319.2 MB, free: 7.777 MB / 282.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.903e-06/0.06721, allocations: 3.984 kB / 319.2 MB, free: 7.773 MB / 282.7 MB
Notification: Performance of FrontEnd: time 2.345e-06/0.06722, allocations: 8 kB / 319.2 MB, free: 7.766 MB / 282.7 MB
Notification: Performance of Transformations before backend: time 0.0001333/0.06735, allocations: 0 / 319.2 MB, free: 7.766 MB / 282.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 387
 * Number of variables: 387
Notification: Performance of Generate backend data structure: time 0.008009/0.07536, allocations: 2.85 MB / 322 MB, free: 4.871 MB / 282.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.683e-05/0.0754, allocations: 15.98 kB / 322.1 MB, free: 4.855 MB / 282.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004089/0.07949, allocations: 364.6 kB / 322.4 MB, free: 4.5 MB / 282.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003092/0.08259, allocations: 1.413 MB / 323.8 MB, free: 3.02 MB / 282.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001004/0.08269, allocations: 127.4 kB / 324 MB, free: 2.895 MB / 282.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002162/0.0829, allocations: 160.4 kB / 324.1 MB, free: 2.738 MB / 282.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001887/0.08479, allocations: 1.177 MB / 325.3 MB, free: 1.504 MB / 282.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 3.247e-05/0.08482, allocations: 7.875 kB / 325.3 MB, free: 1.496 MB / 282.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.962e-05/0.08492, allocations: 67.92 kB / 325.4 MB, free: 1.43 MB / 282.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.318e-05/0.085, allocations: 62.97 kB / 325.4 MB, free: 1.367 MB / 282.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009167/0.08592, allocations: 0.5123 MB / 325.9 MB, free: 0.8438 MB / 282.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007127/0.09305, allocations: 4.181 MB / 330.1 MB, free: 12.52 MB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.00142/0.09447, allocations: 0.7031 MB / 330.8 MB, free: 11.74 MB / 298.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003186/0.09479, allocations: 252.7 kB / 331.1 MB, free: 11.47 MB / 298.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 6.251e-05/0.09485, allocations: 21 kB / 331.1 MB, free: 11.45 MB / 298.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.444e-05/0.09489, allocations: 59.44 kB / 331.1 MB, free: 11.38 MB / 298.7 MB
Notification: Performance of pre-optimization done (n=118): time 7.434e-06/0.0949, allocations: 0 / 331.1 MB, free: 11.38 MB / 298.7 MB
Notification: Performance of matching and sorting (n=118): time 0.005453/0.1004, allocations: 2.054 MB / 333.2 MB, free: 9.312 MB / 298.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 9.657e-05/0.1005, allocations: 248.3 kB / 333.4 MB, free: 9.016 MB / 298.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001643/0.1021, allocations: 1.57 MB / 335 MB, free: 7.418 MB / 298.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0001101/0.1022, allocations: 53.7 kB / 335.1 MB, free: 7.359 MB / 298.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0004161/0.1026, allocations: 0.7736 MB / 335.8 MB, free: 6.574 MB / 298.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003454/0.103, allocations: 444.1 kB / 336.3 MB, free: 6.137 MB / 298.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003393/0.1033, allocations: 327.2 kB / 336.6 MB, free: 5.812 MB / 298.7 MB
Notification: Performance of setup shared object (initialization): time 8.338e-05/0.1034, allocations: 305.1 kB / 336.9 MB, free: 5.512 MB / 298.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003414/0.1037, allocations: 206.8 kB / 337.1 MB, free: 5.309 MB / 298.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008294/0.1046, allocations: 0.7708 MB / 337.9 MB, free: 4.266 MB / 298.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001085/0.1056, allocations: 1.15 MB / 339 MB, free: 2.84 MB / 298.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.57e-05/0.1057, allocations: 8 kB / 339 MB, free: 2.832 MB / 298.7 MB
Notification: Performance of matching and sorting (n=226) (initialization): time 0.003198/0.1089, allocations: 1.546 MB / 340.6 MB, free: 1.273 MB / 298.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.686e-05/0.1089, allocations: 16 kB / 340.6 MB, free: 1.258 MB / 298.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.557e-05/0.1089, allocations: 20.12 kB / 340.6 MB, free: 1.238 MB / 298.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003652/0.1126, allocations: 1.255 MB / 341.9 MB, free: 15.97 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009733/0.1135, allocations: 454.1 kB / 342.3 MB, free: 15.54 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.00669/0.1202, allocations: 3.779 MB / 346.1 MB, free: 11.69 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001398/0.1216, allocations: 206.5 kB / 346.3 MB, free: 11.49 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001674/0.1218, allocations: 68 kB / 346.3 MB, free: 11.42 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 89
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (183):
 * Single equations (assignments): 182
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of prepare postOptimizeDAE: time 0.0005366/0.1223, allocations: 224 kB / 346.6 MB, free: 11.19 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003423/0.1227, allocations: 163.8 kB / 346.7 MB, free: 11.03 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003129/0.123, allocations: 262.2 kB / 347 MB, free: 10.77 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.042e-05/0.123, allocations: 19.94 kB / 347 MB, free: 10.75 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 7.113e-06/0.123, allocations: 4 kB / 347 MB, free: 10.75 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.067e-05/0.123, allocations: 11.97 kB / 347 MB, free: 10.74 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00502/0.128, allocations: 2.893 MB / 349.9 MB, free: 7.656 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.391e-05/0.128, allocations: 16 kB / 349.9 MB, free: 7.641 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003976/0.1284, allocations: 180.7 kB / 350.1 MB, free: 7.465 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.003472/0.1319, allocations: 1.224 MB / 351.3 MB, free: 6.234 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.204e-05/0.132, allocations: 43.94 kB / 351.4 MB, free: 6.191 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.00546/0.1375, allocations: 3.46 MB / 354.8 MB, free: 2.621 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.1e-05/0.1375, allocations: 23.92 kB / 354.8 MB, free: 2.598 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003204/0.1407, allocations: 2.287 MB / 357.1 MB, free: 144 kB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0007129/0.1414, allocations: 304.9 kB / 357.4 MB, free: 15.84 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002114/0.1416, allocations: 51.67 kB / 357.5 MB, free: 15.79 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006707/0.1423, allocations: 51.88 kB / 357.5 MB, free: 15.74 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002756/0.1426, allocations: 144.2 kB / 357.7 MB, free: 15.6 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.996e-05/0.1426, allocations: 36 kB / 357.7 MB, free: 15.56 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0007815/0.1434, allocations: 0.7987 MB / 358.5 MB, free: 14.75 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.8e-07/0.1434, allocations: 0 / 358.5 MB, free: 14.75 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001797/0.1452, allocations: 0.7766 MB / 359.3 MB, free: 13.97 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 55
 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (89):
 * Single equations (assignments): 88
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001894/0.1454, allocations: 130.4 kB / 359.4 MB, free: 13.84 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.002223/0.1476, allocations: 1.296 MB / 360.7 MB, free: 12.53 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 3.972e-05/0.1476, allocations: 30.31 kB / 360.7 MB, free: 12.5 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.001133/0.1488, allocations: 0.7634 MB / 361.5 MB, free: 11.72 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002168/0.1509, allocations: 0.4997 MB / 362 MB, free: 11.24 MB / 330.7 MB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Error: Error parsing unit %: Parse error
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0056/0.1565, allocations: 4.144 MB / 366.1 MB, free: 6.875 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0005698/0.1571, allocations: 0.5654 MB / 366.7 MB, free: 6.285 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0006398/0.1577, allocations: 214.2 kB / 366.9 MB, free: 6.07 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007266/0.1585, allocations: 419.1 kB / 367.3 MB, free: 5.652 MB / 330.7 MB
Notification: Performance of SimCode: time 1.183e-06/0.1585, allocations: 4 kB / 367.3 MB, free: 5.648 MB / 330.7 MB
Notification: Performance of Templates: time 0.05461/0.2131, allocations: 46.73 MB / 414.1 MB, free: 7.379 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.398314157966524]