Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009827/0.0009827, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00163/0.00163, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.1/1.1, allocations: 177.1 MB / 203.8 MB, free: 5.473 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo): time 0.04158/0.04158, allocations: 9.555 MB / 269.8 MB, free: 3.816 MB / 250.7 MB " [Timeout remaining time 180] Using package BioChem with version 1.1.3 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.363e-06/1.363e-06, allocations: 0 / 289.2 MB, free: 384 kB / 266.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 2.444e-05/2.58e-05, allocations: 2.312 kB / 289.2 MB, free: 380 kB / 266.7 MB Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.132/0.1321, allocations: 8.971 MB / 298.2 MB, free: 14.8 MB / 266.7 MB Notification: Performance of NFInst.instExpressions: time 0.007022/0.1391, allocations: 3.507 MB / 301.7 MB, free: 12.2 MB / 266.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.001901/0.141, allocations: 114 kB / 301.8 MB, free: 12.2 MB / 266.7 MB Notification: Performance of NFTyping.typeComponents: time 0.001421/0.1424, allocations: 383.1 kB / 302.2 MB, free: 11.91 MB / 266.7 MB Notification: Performance of NFTyping.typeBindings: time 0.001885/0.1443, allocations: 0.5534 MB / 302.8 MB, free: 11.48 MB / 266.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.0013/0.1456, allocations: 0.5827 MB / 303.3 MB, free: 11.09 MB / 266.7 MB Notification: Performance of NFFlatten.flatten: time 0.002672/0.1483, allocations: 2.41 MB / 305.8 MB, free: 9.617 MB / 266.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.001134/0.1494, allocations: 0.8365 MB / 306.6 MB, free: 9.012 MB / 266.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001963/0.1514, allocations: 1.554 MB / 308.1 MB, free: 7.961 MB / 266.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001057/0.1524, allocations: 0.8154 MB / 309 MB, free: 7.453 MB / 266.7 MB Notification: Performance of NFPackage.collectConstants: time 0.0004316/0.1528, allocations: 318.1 kB / 309.3 MB, free: 7.453 MB / 266.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0004181/0.1533, allocations: 320.5 kB / 309.6 MB, free: 7.383 MB / 266.7 MB Notification: Performance of NFScalarize.scalarize: time 0.0002292/0.1535, allocations: 0.5958 MB / 310.2 MB, free: 6.785 MB / 266.7 MB Notification: Performance of NFVerifyModel.verify: time 0.0007038/0.1542, allocations: 0.877 MB / 311.1 MB, free: 5.906 MB / 266.7 MB Notification: Performance of NFConvertDAE.convert: time 0.001396/0.1556, allocations: 1.761 MB / 312.8 MB, free: 4.141 MB / 266.7 MB Notification: Performance of FrontEnd - DAE generated: time 5.11e-06/0.1556, allocations: 0 / 312.8 MB, free: 4.141 MB / 266.7 MB Notification: Performance of FrontEnd: time 1.302e-06/0.1556, allocations: 0 / 312.8 MB, free: 4.141 MB / 266.7 MB Notification: Performance of Transformations before backend: time 4.529e-05/0.1556, allocations: 0.8125 kB / 312.8 MB, free: 4.141 MB / 266.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 687 * Number of variables: 687 Notification: Performance of Generate backend data structure: time 0.00197/0.1576, allocations: 2.294 MB / 315.1 MB, free: 1.828 MB / 266.7 MB Notification: Performance of prepare preOptimizeDAE: time 4.033e-05/0.1577, allocations: 8.906 kB / 315.1 MB, free: 1.82 MB / 266.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004036/0.1581, allocations: 393.8 kB / 315.5 MB, free: 1.438 MB / 266.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.000535/0.1586, allocations: 434.3 kB / 315.9 MB, free: 0.9883 MB / 266.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001334/0.1587, allocations: 308.8 kB / 316.2 MB, free: 0.6602 MB / 266.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001728/0.1589, allocations: 281.3 kB / 316.5 MB, free: 396 kB / 266.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001711/0.1606, allocations: 1.727 MB / 318.2 MB, free: 14.57 MB / 282.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 7.403e-05/0.1607, allocations: 12.95 kB / 318.2 MB, free: 14.56 MB / 282.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001102/0.1608, allocations: 112 kB / 318.4 MB, free: 14.45 MB / 282.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.115e-05/0.1608, allocations: 65.08 kB / 318.4 MB, free: 14.39 MB / 282.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001/0.1618, allocations: 0.6385 MB / 319.1 MB, free: 13.72 MB / 282.7 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00694/0.1688, allocations: 6.371 MB / 325.4 MB, free: 7.09 MB / 282.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0009454/0.1697, allocations: 0.8496 MB / 326.3 MB, free: 6.211 MB / 282.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002618/0.17, allocations: 268.9 kB / 326.5 MB, free: 5.938 MB / 282.7 MB Notification: Performance of preOpt evalFunc (simulation): time 4.922e-05/0.17, allocations: 25.31 kB / 326.6 MB, free: 5.914 MB / 282.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.464e-05/0.1701, allocations: 51.88 kB / 326.6 MB, free: 5.855 MB / 282.7 MB Notification: Performance of pre-optimization done (n=139): time 3.125e-06/0.1701, allocations: 0 / 326.6 MB, free: 5.855 MB / 282.7 MB Notification: Performance of matching and sorting (n=171): time 0.005504/0.1756, allocations: 3.869 MB / 330.5 MB, free: 2.043 MB / 282.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 7.013e-05/0.1756, allocations: 179.5 kB / 330.7 MB, free: 1.828 MB / 282.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003117/0.176, allocations: 482.5 kB / 331.1 MB, free: 1.348 MB / 282.7 MB Notification: Performance of collectPreVariables (initialization): time 5.482e-05/0.176, allocations: 57.7 kB / 331.2 MB, free: 1.285 MB / 282.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0003843/0.1764, allocations: 0.9529 MB / 332.1 MB, free: 328 kB / 282.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.0003543/0.1767, allocations: 0.6664 MB / 332.8 MB, free: 15.64 MB / 298.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003022/0.1771, allocations: 356 kB / 333.2 MB, free: 15.29 MB / 298.7 MB Notification: Performance of setup shared object (initialization): time 8.315e-05/0.1771, allocations: 321.9 kB / 333.5 MB, free: 14.97 MB / 298.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003271/0.1775, allocations: 317.3 kB / 333.8 MB, free: 14.66 MB / 298.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005418/0.178, allocations: 0.8325 MB / 334.6 MB, free: 13.55 MB / 298.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.001351/0.1794, allocations: 1.577 MB / 336.2 MB, free: 11.72 MB / 298.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.133e-05/0.1794, allocations: 8 kB / 336.2 MB, free: 11.71 MB / 298.7 MB Notification: Performance of matching and sorting (n=291) (initialization): time 0.001214/0.1806, allocations: 1.157 MB / 337.4 MB, free: 10.55 MB / 298.7 MB Notification: Performance of prepare postOptimizeDAE: time 2.471e-05/0.1806, allocations: 12 kB / 337.4 MB, free: 10.54 MB / 298.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.933e-05/0.1806, allocations: 20 kB / 337.4 MB, free: 10.52 MB / 298.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 3.109e-05/0.1807, allocations: 28.75 kB / 337.4 MB, free: 10.49 MB / 298.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001642/0.1823, allocations: 0.7568 MB / 338.2 MB, free: 9.73 MB / 298.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.402e-05/0.1823, allocations: 54.88 kB / 338.2 MB, free: 9.684 MB / 298.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004619/0.1828, allocations: 71.95 kB / 338.3 MB, free: 9.613 MB / 298.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.862e-05/0.1829, allocations: 72 kB / 338.4 MB, free: 9.543 MB / 298.7 MB Warning: Assuming fixed start value for the following 41 variables: V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = 0.0 start = 78000.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.I_po.c:VARIABLE(min = 0.0 start = 3.6 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real BetaCell.Y.c:VARIABLE(min = -1e60 start = 0.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = 0.0 start = 2.34e12 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = 0.0 start = 1.61e10 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = 0.0 start = 1.68e7 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = 0.0 start = 5.8e8 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real BetaCell.G_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(fixed = true ) \"Insulin action on glucose utilization, signed deviation from basal\" type: Real PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 86 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (291): * Single equations (assignments): 291 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.000534/0.1834, allocations: 411.4 kB / 338.8 MB, free: 9.164 MB / 298.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001708/0.1836, allocations: 111.9 kB / 338.9 MB, free: 9.055 MB / 298.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0008218/0.1844, allocations: 0.7603 MB / 339.6 MB, free: 8.281 MB / 298.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.155e-05/0.1844, allocations: 16 kB / 339.7 MB, free: 8.266 MB / 298.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.29e-06/0.1844, allocations: 7.938 kB / 339.7 MB, free: 8.258 MB / 298.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.167e-05/0.1844, allocations: 15.91 kB / 339.7 MB, free: 8.242 MB / 298.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002729/0.1871, allocations: 1.754 MB / 341.4 MB, free: 6.453 MB / 298.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.001e-06/0.1872, allocations: 4 kB / 341.4 MB, free: 6.449 MB / 298.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001508/0.1887, allocations: 0.5735 MB / 342 MB, free: 5.875 MB / 298.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 9.959e-06/0.1887, allocations: 8 kB / 342 MB, free: 5.867 MB / 298.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.968e-05/0.1888, allocations: 51.97 kB / 342.1 MB, free: 5.816 MB / 298.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.847e-06/0.1888, allocations: 11.98 kB / 342.1 MB, free: 5.805 MB / 298.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.146e-06/0.1888, allocations: 4 kB / 342.1 MB, free: 5.801 MB / 298.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001296/0.1901, allocations: 1.513 MB / 343.6 MB, free: 4.266 MB / 298.7 MB Notification: Performance of postOpt removeConstants (simulation): time 9.932e-05/0.1902, allocations: 87.33 kB / 343.7 MB, free: 4.18 MB / 298.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.576e-05/0.1903, allocations: 44 kB / 343.7 MB, free: 4.137 MB / 298.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003623/0.1906, allocations: 36 kB / 343.8 MB, free: 4.102 MB / 298.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001378/0.1908, allocations: 120.9 kB / 343.9 MB, free: 3.984 MB / 298.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.933e-05/0.1908, allocations: 35.97 kB / 343.9 MB, free: 3.949 MB / 298.7 MB Notification: Performance of sorting global known variables: time 0.0001232/0.1909, allocations: 176.4 kB / 344.1 MB, free: 3.773 MB / 298.7 MB Notification: Performance of sort global known variables: time 5e-08/0.1909, allocations: 0 / 344.1 MB, free: 3.773 MB / 298.7 MB Notification: Performance of remove unused functions: time 0.0009851/0.1919, allocations: 420 kB / 344.5 MB, free: 3.363 MB / 298.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 7 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (173): * Single equations (assignments): 173 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000162/0.1921, allocations: 141.4 kB / 344.6 MB, free: 3.223 MB / 298.7 MB Notification: Performance of simCode: created initialization part: time 0.001021/0.1931, allocations: 0.9513 MB / 345.6 MB, free: 2.266 MB / 298.7 MB Notification: Performance of simCode: created event and clocks part: time 2.814e-05/0.1931, allocations: 21.81 kB / 345.6 MB, free: 2.242 MB / 298.7 MB Notification: Performance of simCode: created simulation system equations: time 0.0004214/0.1936, allocations: 456.1 kB / 346 MB, free: 1.797 MB / 298.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007391/0.1943, allocations: 243.8 kB / 346.3 MB, free: 1.582 MB / 298.7 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00425/0.1986, allocations: 3.5 MB / 349.8 MB, free: 14.01 MB / 314.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002641/0.1988, allocations: 330.4 kB / 350.1 MB, free: 13.66 MB / 314.7 MB Notification: Performance of simCode: alias equations: time 0.000537/0.1994, allocations: 157.5 kB / 350.3 MB, free: 13.5 MB / 314.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005699/0.1999, allocations: 341.1 kB / 350.6 MB, free: 13.17 MB / 314.7 MB Notification: Performance of SimCode: time 1.182e-06/0.1999, allocations: 0 / 350.6 MB, free: 13.17 MB / 314.7 MB Notification: Performance of Templates: time 0.02326/0.2232, allocations: 17.51 MB / 368.1 MB, free: 12.01 MB / 330.7 MB " [Timeout remaining time 660] make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile [Timeout 660] (rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & ./BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 3.4227849217131734]