Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0003058/0.0003058, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0002221/0.0002221, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.1471/0.1471, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Drugs/ATC/B/B02BD15.mo:9:22-9:32:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 6000000000 into a real [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 0.6154/0.6154, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 179] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 1.583e-06/1.583e-06, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 1.282e-05/1.441e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites): time 0.003907/0.003922, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.001425/0.005347, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 0.0001446/0.005491, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 0.000189/0.00568, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeBindings: time 0.0004621/0.006142, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeClassSections: time 0.0002678/0.00641, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 0.0004488/0.006859, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 0.0001769/0.007036, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 0.0003955/0.007431, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 0.000231/0.007662, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 5.219e-05/0.007714, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 5.571e-05/0.00777, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 9.336e-05/0.007863, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 0.0001911/0.008055, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 0.0003952/0.00845, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 6.498e-05/0.008515, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 1.202e-06/0.008516, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 5.901e-06/0.008522, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 105 * Number of variables: 105 Notification: Performance of Generate backend data structure: time 0.0008835/0.009405, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 6.978e-05/0.009475, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001146/0.00959, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002923/0.009882, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.651e-05/0.009948, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 7.57e-05/0.01002, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004546/0.01048, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 2.33e-05/0.0105, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.651e-05/0.01055, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.017e-05/0.01056, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002766/0.01084, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0009969/0.01183, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.0002758/0.01211, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 0.0001211/0.01223, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 1.278e-05/0.01224, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003347/0.01258, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=74): time 5.01e-06/0.01258, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=79): time 0.001882/0.01446, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 6.16e-05/0.01452, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000119/0.01464, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 6.711e-05/0.01471, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 7.185e-05/0.01478, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 0.0001741/0.01496, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001367/0.01509, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 2.944e-05/0.01512, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001298/0.01525, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001714/0.01542, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 0.0004802/0.0159, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.506e-06/0.01591, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=113) (initialization): time 0.0005439/0.01646, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 4.304e-05/0.0165, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.071e-05/0.01651, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 2.305e-05/0.01653, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005115/0.01705, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.246e-05/0.01707, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002298/0.0173, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.716e-05/0.01734, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 22 variables: periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real acetaminophen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluconic_acid.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real sulfate_conjugates.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real NAPQI.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluthatione_conjugation.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real acetaminophen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real acetaminophen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.rising:DISCRETE(fixed = true protected = true ) type: Boolean NAPQI.rising:DISCRETE(fixed = true protected = true ) type: Boolean sulfate_conjugates.rising:DISCRETE(fixed = true protected = true ) type: Boolean gluconic_acid.rising:DISCRETE(fixed = true protected = true ) type: Boolean acetaminophen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 22 * Number of states: 0 () * Number of discrete variables: 45 ($PRE.acetaminophen.Cmin,acetaminophen.Cmin,$PRE.acetaminophen.Cmax,acetaminophen.Cmax,$PRE.gluconic_acid.Cmin,gluconic_acid.Cmin,$PRE.gluconic_acid.Cmax,gluconic_acid.Cmax,$PRE.sulfate_conjugates.Cmin,sulfate_conjugates.Cmin,$PRE.sulfate_conjugates.Cmax,sulfate_conjugates.Cmax,$PRE.NAPQI.Cmin,NAPQI.Cmin,$PRE.NAPQI.Cmax,NAPQI.Cmax,$PRE.gluthatione_conjugation.Cmin,gluthatione_conjugation.Cmin,$PRE.gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmax,$PRE.gluthatione_conjugation.rising,$PRE.NAPQI.rising,$PRE.sulfate_conjugates.rising,$PRE.gluconic_acid.rising,$PRE.acetaminophen.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,gluthatione_conjugation.rising,NAPQI.rising,sulfate_conjugates.rising,gluconic_acid.rising,acetaminophen.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (107): * Single equations (assignments): 101 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0002861/0.01763, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 8.119e-05/0.01771, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.732e-05/0.0178, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.993e-06/0.01781, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 6.112e-06/0.01781, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.863e-06/0.01782, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0009602/0.01878, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.318e-06/0.01878, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004091/0.01919, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 6.592e-06/0.0192, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.59e-05/0.01925, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.485e-06/0.01925, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.593e-06/0.01925, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0006812/0.01994, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 5.842e-05/0.01999, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001528/0.02015, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001882/0.02034, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001308/0.02047, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.502e-05/0.02051, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 5.743e-05/0.02057, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 5.6e-06/0.02057, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.0006331/0.02121, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 16 (periodicDose.TotalCumulativeMass,periodicDose.variableDose.TotalCumulativeMass,acetaminophen.C,acetaminophen.AUC,gluconic_acid.C,gluconic_acid.AUC,sulfate_conjugates.C,sulfate_conjugates.AUC,NAPQI.C,NAPQI.AUC,gluthatione_conjugation.C,gluthatione_conjugation.AUC,kidney.MExc,kidney1.MExc,kidney11.MExc,kidney2.MExc) * Number of discrete variables: 28 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,periodicDose.pulse.T_start,periodicDose.pulse.count,acetaminophen.Cmax,acetaminophen.Cmin,acetaminophen.rising,gluconic_acid.Cmax,gluconic_acid.Cmin,gluconic_acid.rising,sulfate_conjugates.Cmax,sulfate_conjugates.Cmin,sulfate_conjugates.rising,NAPQI.Cmax,NAPQI.Cmin,NAPQI.rising,gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmin,gluthatione_conjugation.rising) * Number of discrete states: 26 (periodicDose.pulse.count,NAPQI.Cmin,$whenCondition5,NAPQI.Cmax,$whenCondition4,NAPQI.rising,gluconic_acid.Cmin,$whenCondition9,gluconic_acid.Cmax,$whenCondition8,gluconic_acid.rising,sulfate_conjugates.Cmin,$whenCondition7,sulfate_conjugates.Cmax,$whenCondition6,sulfate_conjugates.rising,gluthatione_conjugation.Cmin,$whenCondition3,gluthatione_conjugation.Cmax,$whenCondition2,gluthatione_conjugation.rising,acetaminophen.Cmin,$whenCondition11,acetaminophen.Cmax,$whenCondition10,acetaminophen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (64): * Single equations (assignments): 57 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001969/0.0214, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.0005241/0.02193, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 5.581e-06/0.02193, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 0.0002799/0.02221, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006726/0.02289, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001533/0.02442, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001059/0.02452, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 0.0001497/0.02467, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003414/0.02502, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 3.058e-05/0.02505, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Templates: time 0.001588/0.02663, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 900] [Calling sys.exit(0), Time elapsed: 1.4175635930150747]