Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009837/0.0009837, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001131/0.001131, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9369/0.9369, allocations: 177.1 MB / 203.8 MB, free: 5.492 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.582/1.582, allocations: 273.5 MB / 0.5213 GB, free: 14.72 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.082e-06/1.082e-06, allocations: 0 / 0.5955 GB, free: 2.719 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.528e-05/1.636e-05, allocations: 5.406 kB / 0.5955 GB, free: 2.715 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.007726/0.007743, allocations: 11.54 MB / 0.6068 GB, free: 7.234 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.005713/0.01346, allocations: 2.587 MB / 0.6093 GB, free: 4.652 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0008539/0.01431, allocations: 20 kB / 0.6093 GB, free: 4.633 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0005172/0.01483, allocations: 305 kB / 0.6096 GB, free: 4.332 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.001339/0.01617, allocations: 0.786 MB / 0.6104 GB, free: 3.539 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.00105/0.01722, allocations: 0.5923 MB / 0.6109 GB, free: 2.949 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.002119/0.01934, allocations: 2.87 MB / 0.6137 GB, free: 68 kB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.3541/0.3734, allocations: 3.242 MB / 0.6169 GB, free: 41.33 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002604/0.376, allocations: 2.567 MB / 0.6194 GB, free: 41.33 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.002174/0.3782, allocations: 1.977 MB / 0.6214 GB, free: 41.27 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0004326/0.3786, allocations: 423.2 kB / 0.6218 GB, free: 41.27 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004366/0.379, allocations: 427.3 kB / 0.6222 GB, free: 41.27 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0004243/0.3795, allocations: 0.9246 MB / 0.6231 GB, free: 40.86 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0008684/0.3803, allocations: 1.297 MB / 0.6243 GB, free: 40.43 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001728/0.3821, allocations: 2.589 MB / 0.6269 GB, free: 38.96 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.577e-06/0.3821, allocations: 3 kB / 0.6269 GB, free: 38.96 MB / 0.5262 GB Notification: Performance of FrontEnd: time 9.82e-07/0.3821, allocations: 0.6562 kB / 0.6269 GB, free: 38.96 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.798e-05/0.3821, allocations: 0 / 0.6269 GB, free: 38.96 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.003338/0.3854, allocations: 2.682 MB / 0.6295 GB, free: 37.06 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.326e-05/0.3855, allocations: 9.875 kB / 0.6295 GB, free: 37.06 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004428/0.3859, allocations: 296.5 kB / 0.6298 GB, free: 36.95 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008787/0.3868, allocations: 0.6786 MB / 0.6304 GB, free: 36.54 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.69e-05/0.3869, allocations: 134.4 kB / 0.6306 GB, free: 36.48 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002797/0.3871, allocations: 212.8 kB / 0.6308 GB, free: 36.4 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.002108/0.3892, allocations: 2.742 MB / 0.6334 GB, free: 34.64 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.623e-05/0.3893, allocations: 16.61 kB / 0.6335 GB, free: 34.63 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001779/0.3895, allocations: 78.2 kB / 0.6335 GB, free: 34.57 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.788e-05/0.3895, allocations: 44.41 kB / 0.6336 GB, free: 34.57 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001465/0.391, allocations: 1.392 MB / 0.6349 GB, free: 34.14 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007179/0.3981, allocations: 4.926 MB / 0.6398 GB, free: 31.48 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0009973/0.3991, allocations: 0.8513 MB / 0.6406 GB, free: 31.15 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0006142/0.3998, allocations: 0.5451 MB / 0.6411 GB, free: 30.88 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.703e-05/0.3998, allocations: 37.2 kB / 0.6412 GB, free: 30.87 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001025/0.4008, allocations: 1.43 MB / 0.6425 GB, free: 29.78 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003566/0.4044, allocations: 1.89 MB / 0.6444 GB, free: 29.32 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 5.42e-06/0.4044, allocations: 1.125 kB / 0.6444 GB, free: 29.32 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.004971/0.4094, allocations: 3.899 MB / 0.6482 GB, free: 27.41 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 6.9e-05/0.4095, allocations: 410.9 kB / 0.6486 GB, free: 26.96 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003974/0.4099, allocations: 0.7627 MB / 0.6493 GB, free: 26.66 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001516/0.41, allocations: 77.78 kB / 0.6494 GB, free: 26.59 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001756/0.4102, allocations: 0.5641 MB / 0.65 GB, free: 26.15 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.000318/0.4105, allocations: 0.7292 MB / 0.6507 GB, free: 25.56 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005045/0.411, allocations: 0.5119 MB / 0.6512 GB, free: 25.25 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 2.368e-05/0.411, allocations: 303.3 kB / 0.6515 GB, free: 24.95 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006684/0.4117, allocations: 0.7684 MB / 0.6522 GB, free: 24.5 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007688/0.4125, allocations: 1.263 MB / 0.6534 GB, free: 23.4 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002144/0.4146, allocations: 2.76 MB / 0.6561 GB, free: 21.39 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.841e-06/0.4146, allocations: 4 kB / 0.6561 GB, free: 21.39 MB / 0.5262 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.001874/0.4165, allocations: 2.039 MB / 0.6581 GB, free: 19.3 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 6.128e-05/0.4166, allocations: 270.9 kB / 0.6584 GB, free: 18.99 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.258e-05/0.4166, allocations: 12 kB / 0.6584 GB, free: 18.98 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.247e-05/0.4166, allocations: 28.69 kB / 0.6584 GB, free: 18.95 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001539/0.4181, allocations: 0.7268 MB / 0.6591 GB, free: 18.25 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.666e-05/0.4181, allocations: 29.98 kB / 0.6592 GB, free: 18.23 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008874/0.419, allocations: 103.9 kB / 0.6593 GB, free: 18.12 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001528/0.4192, allocations: 147.7 kB / 0.6594 GB, free: 17.98 MB / 0.5262 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.000595/0.4198, allocations: 0.5363 MB / 0.6599 GB, free: 17.49 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003022/0.4201, allocations: 163.9 kB / 0.6601 GB, free: 17.33 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002093/0.4222, allocations: 2.002 MB / 0.6621 GB, free: 15.34 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.548e-06/0.4222, allocations: 23.92 kB / 0.6621 GB, free: 15.32 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.106e-06/0.4222, allocations: 0 / 0.6621 GB, free: 15.32 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.218e-05/0.4222, allocations: 11.25 kB / 0.6621 GB, free: 15.31 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002668/0.4249, allocations: 2.334 MB / 0.6644 GB, free: 13.07 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.527e-06/0.4249, allocations: 0 / 0.6644 GB, free: 13.07 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001122/0.426, allocations: 404.5 kB / 0.6647 GB, free: 12.69 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.58e-06/0.426, allocations: 8 kB / 0.6648 GB, free: 12.68 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001044/0.4261, allocations: 87.83 kB / 0.6648 GB, free: 12.59 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.819e-06/0.4261, allocations: 4 kB / 0.6648 GB, free: 12.59 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.252e-06/0.4261, allocations: 0 / 0.6648 GB, free: 12.59 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001983/0.4281, allocations: 2.231 MB / 0.667 GB, free: 10.31 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0004203/0.4285, allocations: 191.8 kB / 0.6672 GB, free: 10.12 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002095/0.4287, allocations: 63.88 kB / 0.6673 GB, free: 10.06 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006697/0.4294, allocations: 75.94 kB / 0.6673 GB, free: 9.988 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001798/0.4296, allocations: 161.7 kB / 0.6675 GB, free: 9.832 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001/0.4297, allocations: 79.83 kB / 0.6676 GB, free: 9.754 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.000225/0.4299, allocations: 418.7 kB / 0.668 GB, free: 9.379 MB / 0.5262 GB Notification: Performance of sort global known variables: time 5e-08/0.4299, allocations: 4 kB / 0.668 GB, free: 9.375 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0009639/0.4309, allocations: 0.625 MB / 0.6686 GB, free: 8.75 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002287/0.4311, allocations: 194.1 kB / 0.6688 GB, free: 8.578 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001708/0.4328, allocations: 2.245 MB / 0.671 GB, free: 6.211 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.022e-05/0.4328, allocations: 12 kB / 0.671 GB, free: 6.199 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0007213/0.4335, allocations: 1.018 MB / 0.672 GB, free: 5.164 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001144/0.4347, allocations: 0.5581 MB / 0.6725 GB, free: 4.641 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004028/0.4387, allocations: 3.922 MB / 0.6763 GB, free: 0.7539 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001536/0.4389, allocations: 325.7 kB / 0.6767 GB, free: 420 kB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.001129/0.44, allocations: 0.49 MB / 0.6771 GB, free: 48 kB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001622/0.4416, allocations: 0.6582 MB / 0.6778 GB, free: 15.38 MB / 0.5418 GB Notification: Performance of SimCode: time 1.342e-06/0.4416, allocations: 0 / 0.6778 GB, free: 15.38 MB / 0.5418 GB Notification: Performance of Templates: time 0.04242/0.484, allocations: 43.4 MB / 0.7202 GB, free: 5.492 MB / 0.573 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.41438872134313]