Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001239/0.001239, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009474/0.0009474, allocations: 177 kB / 23.36 MB, free: 1.129 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9399/0.9399, allocations: 177.1 MB / 203.8 MB, free: 5.473 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.653/1.653, allocations: 273.5 MB / 0.5213 GB, free: 14.64 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.122e-06/1.122e-06, allocations: 0 / 0.5954 GB, free: 2.727 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.173e-05/1.285e-05, allocations: 2.312 kB / 0.5954 GB, free: 2.723 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005221/0.005234, allocations: 6.592 MB / 0.6018 GB, free: 12.21 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.003604/0.008838, allocations: 2.065 MB / 0.6039 GB, free: 10.14 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005029/0.009341, allocations: 23.94 kB / 0.6039 GB, free: 10.12 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0006891/0.01003, allocations: 293.6 kB / 0.6042 GB, free: 9.828 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.0008143/0.01084, allocations: 468.1 kB / 0.6046 GB, free: 9.367 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.0009195/0.01176, allocations: 0.5381 MB / 0.6051 GB, free: 8.828 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.001386/0.01315, allocations: 1.801 MB / 0.6069 GB, free: 7.02 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003245/0.01347, allocations: 273.6 kB / 0.6072 GB, free: 6.734 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.000636/0.01411, allocations: 0.9123 MB / 0.608 GB, free: 5.82 MB / 0.5261 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004553/0.01457, allocations: 0.5296 MB / 0.6086 GB, free: 5.289 MB / 0.5261 GB Notification: Performance of NFPackage.collectConstants: time 0.0001379/0.0147, allocations: 168 kB / 0.6087 GB, free: 5.125 MB / 0.5261 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003013/0.01501, allocations: 307.4 kB / 0.609 GB, free: 4.824 MB / 0.5261 GB Notification: Performance of NFScalarize.scalarize: time 0.0002148/0.01522, allocations: 366.7 kB / 0.6094 GB, free: 4.465 MB / 0.5261 GB Notification: Performance of NFVerifyModel.verify: time 0.0003594/0.01558, allocations: 0.5222 MB / 0.6099 GB, free: 3.941 MB / 0.5261 GB Notification: Performance of NFConvertDAE.convert: time 0.0009837/0.01656, allocations: 1.386 MB / 0.6112 GB, free: 2.551 MB / 0.5261 GB Notification: Performance of FrontEnd - DAE generated: time 2.414e-06/0.01657, allocations: 0 / 0.6112 GB, free: 2.551 MB / 0.5261 GB Notification: Performance of FrontEnd: time 8.02e-07/0.01657, allocations: 0 / 0.6112 GB, free: 2.551 MB / 0.5261 GB Notification: Performance of Transformations before backend: time 1.001e-05/0.01658, allocations: 0 / 0.6112 GB, free: 2.551 MB / 0.5261 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.00173/0.01831, allocations: 2.16 MB / 0.6133 GB, free: 236 kB / 0.5261 GB Notification: Performance of prepare preOptimizeDAE: time 3.522e-05/0.01834, allocations: 8.031 kB / 0.6133 GB, free: 228 kB / 0.5261 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.3961/0.4145, allocations: 472.1 kB / 0.6138 GB, free: 53.42 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006974/0.4152, allocations: 0.5045 MB / 0.6143 GB, free: 53.27 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.894e-05/0.4152, allocations: 73.78 kB / 0.6144 GB, free: 53.27 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001425/0.4154, allocations: 112.4 kB / 0.6145 GB, free: 53.27 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001087/0.4164, allocations: 1.209 MB / 0.6156 GB, free: 52.65 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.485e-05/0.4165, allocations: 12.08 kB / 0.6157 GB, free: 52.65 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.698e-05/0.4165, allocations: 44.62 kB / 0.6157 GB, free: 52.65 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.16e-05/0.4166, allocations: 21.62 kB / 0.6157 GB, free: 52.65 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006736/0.4172, allocations: 0.8449 MB / 0.6165 GB, free: 52.12 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002182/0.4194, allocations: 1.715 MB / 0.6182 GB, free: 51.51 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.000909/0.4203, allocations: 1.171 MB / 0.6194 GB, free: 50.72 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003738/0.4207, allocations: 0.6915 MB / 0.62 GB, free: 50.18 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.297e-05/0.4208, allocations: 22.23 kB / 0.6201 GB, free: 50.18 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001001/0.4218, allocations: 1.57 MB / 0.6216 GB, free: 49.07 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 3.496e-06/0.4218, allocations: 0 / 0.6216 GB, free: 49.07 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.003706/0.4255, allocations: 4.925 MB / 0.6264 GB, free: 45.61 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001506/0.4256, allocations: 1.032 MB / 0.6274 GB, free: 44.4 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005042/0.4261, allocations: 0.7225 MB / 0.6281 GB, free: 44.23 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 7.185e-05/0.4262, allocations: 74.48 kB / 0.6282 GB, free: 44.17 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.000143/0.4263, allocations: 331.3 kB / 0.6285 GB, free: 43.95 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002132/0.4265, allocations: 0.5372 MB / 0.629 GB, free: 43.53 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002362/0.4268, allocations: 282.1 kB / 0.6293 GB, free: 43.41 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 2.983e-05/0.4268, allocations: 305.5 kB / 0.6296 GB, free: 43.12 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004028/0.4272, allocations: 0.8263 MB / 0.6304 GB, free: 42.37 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005422/0.4278, allocations: 1.204 MB / 0.6316 GB, free: 41.15 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001477/0.4292, allocations: 2.676 MB / 0.6342 GB, free: 38.73 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.117e-06/0.4292, allocations: 2.938 kB / 0.6342 GB, free: 38.73 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.001431/0.4307, allocations: 2.204 MB / 0.6363 GB, free: 37.02 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001205/0.4308, allocations: 0.5656 MB / 0.6369 GB, free: 36.35 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.479e-05/0.4308, allocations: 9.844 kB / 0.6369 GB, free: 36.35 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.71e-05/0.4308, allocations: 20.75 kB / 0.6369 GB, free: 36.35 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006262/0.4315, allocations: 336.5 kB / 0.6372 GB, free: 36.27 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.664e-05/0.4315, allocations: 24.7 kB / 0.6373 GB, free: 36.27 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004697/0.432, allocations: 86.12 kB / 0.6373 GB, free: 36.23 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001902/0.4321, allocations: 238.8 kB / 0.6376 GB, free: 36.13 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0006392/0.4328, allocations: 0.8877 MB / 0.6384 GB, free: 35.32 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003973/0.4332, allocations: 389.3 kB / 0.6388 GB, free: 35.17 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001248/0.4333, allocations: 140.5 kB / 0.6389 GB, free: 35.06 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.468e-06/0.4333, allocations: 16.5 kB / 0.639 GB, free: 35.05 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.66e-05/0.4333, allocations: 2.844 kB / 0.639 GB, free: 35.05 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.838e-06/0.4333, allocations: 9.344 kB / 0.639 GB, free: 35.05 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002116/0.4355, allocations: 2.884 MB / 0.6418 GB, free: 32.88 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.639e-06/0.4355, allocations: 2.875 kB / 0.6418 GB, free: 32.88 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005799/0.436, allocations: 231.9 kB / 0.642 GB, free: 32.82 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 8.065e-06/0.436, allocations: 5.688 kB / 0.642 GB, free: 32.82 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.73e-05/0.4361, allocations: 58.52 kB / 0.6421 GB, free: 32.79 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.861e-06/0.4361, allocations: 8.938 kB / 0.6421 GB, free: 32.79 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.553e-06/0.4361, allocations: 1.375 kB / 0.6421 GB, free: 32.79 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001807/0.4379, allocations: 3.361 MB / 0.6454 GB, free: 30.09 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003609/0.4383, allocations: 165.4 kB / 0.6455 GB, free: 30 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000154/0.4385, allocations: 65.91 kB / 0.6456 GB, free: 29.96 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003536/0.4388, allocations: 68.17 kB / 0.6457 GB, free: 29.94 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000174/0.439, allocations: 146.5 kB / 0.6458 GB, free: 29.84 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001683/0.4391, allocations: 227.3 kB / 0.646 GB, free: 29.73 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0003118/0.4395, allocations: 356.6 kB / 0.6463 GB, free: 29.57 MB / 0.5262 GB Notification: Performance of sort global known variables: time 6e-08/0.4395, allocations: 0.75 kB / 0.6463 GB, free: 29.57 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0009461/0.4404, allocations: 379.1 kB / 0.6467 GB, free: 29.52 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003351/0.4407, allocations: 280.2 kB / 0.647 GB, free: 29.36 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001404/0.4421, allocations: 2.934 MB / 0.6498 GB, free: 26.63 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.058e-05/0.4422, allocations: 8.438 kB / 0.6499 GB, free: 26.63 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0007045/0.4429, allocations: 1.782 MB / 0.6516 GB, free: 24.91 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0009725/0.4438, allocations: 393.2 kB / 0.652 GB, free: 24.75 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003598/0.4474, allocations: 3.243 MB / 0.6551 GB, free: 22.56 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002242/0.4477, allocations: 306.7 kB / 0.6554 GB, free: 22.38 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.000438/0.4481, allocations: 116.2 kB / 0.6555 GB, free: 22.34 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006971/0.4488, allocations: 462.5 kB / 0.656 GB, free: 22.2 MB / 0.5262 GB Notification: Performance of SimCode: time 1.262e-06/0.4488, allocations: 0 / 0.656 GB, free: 22.2 MB / 0.5262 GB Notification: Performance of Templates: time 0.02535/0.4741, allocations: 25.13 MB / 0.6805 GB, free: 0.7344 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.390224731061608]