Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009382/0.0009382, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009437/0.0009437, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.96/0.96, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.55/1.55, allocations: 273.5 MB / 0.5213 GB, free: 14.67 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.963e-06/1.963e-06, allocations: 3.938 kB / 0.5954 GB, free: 2.766 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.072e-05/2.268e-05, allocations: 6.312 kB / 0.5954 GB, free: 2.758 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005874/0.005896, allocations: 6.767 MB / 0.602 GB, free: 12.06 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.001895/0.007791, allocations: 1.345 MB / 0.6033 GB, free: 10.72 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002119/0.008003, allocations: 4 kB / 0.6033 GB, free: 10.71 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0001788/0.008182, allocations: 116.3 kB / 0.6034 GB, free: 10.6 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.0004413/0.008623, allocations: 345 kB / 0.6038 GB, free: 10.27 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.000407/0.00903, allocations: 283.6 kB / 0.604 GB, free: 9.992 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.0007975/0.009828, allocations: 1.229 MB / 0.6052 GB, free: 8.758 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002185/0.01005, allocations: 181.8 kB / 0.6054 GB, free: 8.562 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005112/0.01056, allocations: 0.6238 MB / 0.606 GB, free: 7.938 MB / 0.5261 GB Notification: Performance of NFSimplifyModel.simplify: time 0.00036/0.01092, allocations: 362.9 kB / 0.6064 GB, free: 7.582 MB / 0.5261 GB Notification: Performance of NFPackage.collectConstants: time 9.367e-05/0.01101, allocations: 108 kB / 0.6065 GB, free: 7.477 MB / 0.5261 GB Notification: Performance of NFFlatten.collectFunctions: time 9.445e-05/0.01111, allocations: 112 kB / 0.6066 GB, free: 7.367 MB / 0.5261 GB Notification: Performance of NFScalarize.scalarize: time 9.947e-05/0.01121, allocations: 207.2 kB / 0.6068 GB, free: 7.164 MB / 0.5261 GB Notification: Performance of NFVerifyModel.verify: time 0.0002396/0.01144, allocations: 359.2 kB / 0.6071 GB, free: 6.812 MB / 0.5261 GB Notification: Performance of NFConvertDAE.convert: time 0.000499/0.01194, allocations: 0.7164 MB / 0.6078 GB, free: 6.094 MB / 0.5261 GB Notification: Performance of FrontEnd - DAE generated: time 1.874e-06/0.01195, allocations: 0 / 0.6078 GB, free: 6.094 MB / 0.5261 GB Notification: Performance of FrontEnd: time 6.51e-07/0.01195, allocations: 0 / 0.6078 GB, free: 6.094 MB / 0.5261 GB Notification: Performance of Transformations before backend: time 6.221e-06/0.01195, allocations: 0 / 0.6078 GB, free: 6.094 MB / 0.5261 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001128/0.01308, allocations: 1.284 MB / 0.6091 GB, free: 4.719 MB / 0.5261 GB Notification: Performance of prepare preOptimizeDAE: time 2.687e-05/0.01311, allocations: 12.03 kB / 0.6091 GB, free: 4.707 MB / 0.5261 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001107/0.01322, allocations: 103.9 kB / 0.6092 GB, free: 4.605 MB / 0.5261 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003324/0.01355, allocations: 325 kB / 0.6095 GB, free: 4.258 MB / 0.5261 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.747e-05/0.01358, allocations: 45.31 kB / 0.6095 GB, free: 4.215 MB / 0.5261 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.384e-05/0.01365, allocations: 79.36 kB / 0.6096 GB, free: 4.141 MB / 0.5261 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005225/0.01417, allocations: 0.6527 MB / 0.6102 GB, free: 3.422 MB / 0.5261 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.497e-05/0.0142, allocations: 7.938 kB / 0.6102 GB, free: 3.414 MB / 0.5261 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.274e-05/0.01423, allocations: 24 kB / 0.6103 GB, free: 3.391 MB / 0.5261 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.185e-05/0.01424, allocations: 19.94 kB / 0.6103 GB, free: 3.371 MB / 0.5261 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003433/0.01459, allocations: 414.3 kB / 0.6107 GB, free: 2.938 MB / 0.5261 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001179/0.01577, allocations: 1.297 MB / 0.6119 GB, free: 1.605 MB / 0.5261 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0004518/0.01622, allocations: 0.4911 MB / 0.6124 GB, free: 1.051 MB / 0.5261 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001841/0.0164, allocations: 309.1 kB / 0.6127 GB, free: 0.707 MB / 0.5261 GB Notification: Performance of preOpt evalFunc (simulation): time 2.93e-05/0.01643, allocations: 12 kB / 0.6127 GB, free: 0.6953 MB / 0.5261 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.341/0.3574, allocations: 0.9306 MB / 0.6136 GB, free: 52.7 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.144e-06/0.3574, allocations: 0 / 0.6136 GB, free: 52.7 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002261/0.3597, allocations: 2.353 MB / 0.6159 GB, free: 51.34 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.603e-05/0.3598, allocations: 0.5923 MB / 0.6165 GB, free: 50.66 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003093/0.3601, allocations: 455.8 kB / 0.617 GB, free: 50.54 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 4.385e-05/0.3601, allocations: 61.75 kB / 0.617 GB, free: 50.51 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 9.464e-05/0.3602, allocations: 236.5 kB / 0.6172 GB, free: 50.42 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001414/0.3604, allocations: 362.1 kB / 0.6176 GB, free: 50.22 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001788/0.3606, allocations: 191.7 kB / 0.6178 GB, free: 50.21 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 8.016e-05/0.3606, allocations: 404.1 kB / 0.6181 GB, free: 49.89 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002112/0.3609, allocations: 415 kB / 0.6185 GB, free: 49.6 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000309/0.3612, allocations: 0.7148 MB / 0.6192 GB, free: 48.91 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0007966/0.362, allocations: 1.392 MB / 0.6206 GB, free: 47.85 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.631e-06/0.362, allocations: 2.344 kB / 0.6206 GB, free: 47.85 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.0008165/0.3628, allocations: 1.065 MB / 0.6216 GB, free: 47.22 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 6.759e-05/0.3628, allocations: 265.6 kB / 0.6219 GB, free: 46.94 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.192e-05/0.3629, allocations: 8.469 kB / 0.6219 GB, free: 46.94 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.179e-05/0.3629, allocations: 14.19 kB / 0.6219 GB, free: 46.94 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004993/0.3634, allocations: 255.3 kB / 0.6222 GB, free: 46.93 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.613e-05/0.3634, allocations: 20.64 kB / 0.6222 GB, free: 46.92 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002821/0.3637, allocations: 60.88 kB / 0.6222 GB, free: 46.92 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.638e-05/0.3637, allocations: 43.56 kB / 0.6223 GB, free: 46.92 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003177/0.364, allocations: 0.5067 MB / 0.6228 GB, free: 46.57 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.994e-05/0.3641, allocations: 98.17 kB / 0.6229 GB, free: 46.57 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.254e-05/0.3642, allocations: 83.33 kB / 0.6229 GB, free: 46.56 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.322e-06/0.3642, allocations: 11.62 kB / 0.623 GB, free: 46.56 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.36e-06/0.3642, allocations: 0 / 0.623 GB, free: 46.56 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.586e-06/0.3642, allocations: 9.859 kB / 0.623 GB, free: 46.55 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001108/0.3653, allocations: 1.461 MB / 0.6244 GB, free: 45.81 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.555e-06/0.3653, allocations: 0 / 0.6244 GB, free: 45.81 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003978/0.3657, allocations: 160.9 kB / 0.6246 GB, free: 45.81 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 4.608e-06/0.3658, allocations: 4.188 kB / 0.6246 GB, free: 45.81 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.984e-05/0.3658, allocations: 39.72 kB / 0.6246 GB, free: 45.8 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.417e-06/0.3658, allocations: 8.125 kB / 0.6246 GB, free: 45.8 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.222e-06/0.3658, allocations: 3 kB / 0.6246 GB, free: 45.8 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0007603/0.3666, allocations: 1.454 MB / 0.626 GB, free: 44.93 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001638/0.3667, allocations: 84.75 kB / 0.6261 GB, free: 44.89 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.469e-05/0.3668, allocations: 42.59 kB / 0.6261 GB, free: 44.89 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000235/0.367, allocations: 51.14 kB / 0.6262 GB, free: 44.89 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001157/0.3672, allocations: 91.58 kB / 0.6263 GB, free: 44.89 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.827e-05/0.3672, allocations: 31.67 kB / 0.6263 GB, free: 44.88 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001323/0.3673, allocations: 206.2 kB / 0.6265 GB, free: 44.86 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.3673, allocations: 2.766 kB / 0.6265 GB, free: 44.86 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0004493/0.3678, allocations: 246.2 kB / 0.6267 GB, free: 44.86 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001374/0.3679, allocations: 167.3 kB / 0.6269 GB, free: 44.77 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0006805/0.3686, allocations: 1.418 MB / 0.6283 GB, free: 43.68 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 5.671e-06/0.3686, allocations: 5.812 kB / 0.6283 GB, free: 43.68 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0003073/0.3689, allocations: 0.7723 MB / 0.629 GB, free: 43.09 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007196/0.3696, allocations: 275.2 kB / 0.6293 GB, free: 43.08 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002593/0.3722, allocations: 1.857 MB / 0.6311 GB, free: 42.09 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001033/0.3723, allocations: 171.7 kB / 0.6313 GB, free: 41.98 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0002364/0.3725, allocations: 95.3 kB / 0.6314 GB, free: 41.95 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0004323/0.373, allocations: 330.9 kB / 0.6317 GB, free: 41.85 MB / 0.5262 GB Notification: Performance of SimCode: time 6.31e-07/0.373, allocations: 1.562 kB / 0.6317 GB, free: 41.85 MB / 0.5262 GB Notification: Performance of Templates: time 0.01509/0.3881, allocations: 15.25 MB / 0.6466 GB, free: 35.21 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 4.845945678185672]