Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001031/0.001031, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001117/0.001117, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9703/0.9703, allocations: 177.1 MB / 203.8 MB, free: 5.469 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.667/1.667, allocations: 273.5 MB / 0.5213 GB, free: 14.59 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.463e-06/1.463e-06, allocations: 0 / 0.5954 GB, free: 2.688 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.214e-05/1.361e-05, allocations: 2.312 kB / 0.5954 GB, free: 2.684 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.007172/0.007186, allocations: 10.89 MB / 0.606 GB, free: 7.848 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.00279/0.009976, allocations: 2.347 MB / 0.6083 GB, free: 5.5 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003359/0.01031, allocations: 15.94 kB / 0.6083 GB, free: 5.484 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0003067/0.01062, allocations: 225.6 kB / 0.6086 GB, free: 5.262 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.0007795/0.0114, allocations: 0.6936 MB / 0.6092 GB, free: 4.562 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.0008087/0.01221, allocations: 0.6243 MB / 0.6098 GB, free: 3.938 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.001634/0.01384, allocations: 2.669 MB / 0.6124 GB, free: 1.258 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0004168/0.01426, allocations: 401.7 kB / 0.6128 GB, free: 0.8203 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.3795/0.3938, allocations: 1.354 MB / 0.6141 GB, free: 43.57 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001174/0.3949, allocations: 0.7372 MB / 0.6149 GB, free: 43.57 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003173/0.3952, allocations: 279.2 kB / 0.6151 GB, free: 43.57 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003484/0.3956, allocations: 282.8 kB / 0.6154 GB, free: 43.57 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002328/0.3958, allocations: 446.4 kB / 0.6158 GB, free: 43.57 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0006334/0.3965, allocations: 0.761 MB / 0.6166 GB, free: 43.57 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001305/0.3978, allocations: 1.591 MB / 0.6181 GB, free: 43.45 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.557e-06/0.3978, allocations: 0.8906 kB / 0.6181 GB, free: 43.45 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.52e-07/0.3978, allocations: 0.75 kB / 0.6181 GB, free: 43.45 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.426e-05/0.3978, allocations: 0 / 0.6181 GB, free: 43.45 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002106/0.3999, allocations: 2.415 MB / 0.6205 GB, free: 42.01 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.621e-05/0.3999, allocations: 9.406 kB / 0.6205 GB, free: 42.01 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002634/0.4002, allocations: 218.5 kB / 0.6207 GB, free: 42.01 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006169/0.4008, allocations: 0.5441 MB / 0.6212 GB, free: 41.69 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.5e-05/0.4009, allocations: 87.17 kB / 0.6213 GB, free: 41.68 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001491/0.401, allocations: 148.2 kB / 0.6215 GB, free: 41.68 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0009602/0.402, allocations: 1.262 MB / 0.6227 GB, free: 41.1 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.398e-05/0.402, allocations: 18.84 kB / 0.6227 GB, free: 41.09 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.749e-05/0.4021, allocations: 50.09 kB / 0.6228 GB, free: 41.09 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.669e-05/0.4021, allocations: 31.56 kB / 0.6228 GB, free: 41.09 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006076/0.4027, allocations: 0.8233 MB / 0.6236 GB, free: 40.71 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002272/0.405, allocations: 2.832 MB / 0.6264 GB, free: 39.47 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0008215/0.4058, allocations: 0.9964 MB / 0.6273 GB, free: 38.95 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.000374/0.4062, allocations: 0.5942 MB / 0.6279 GB, free: 38.53 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.793e-05/0.4062, allocations: 31 kB / 0.6279 GB, free: 38.53 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0009996/0.4072, allocations: 1.863 MB / 0.6298 GB, free: 37.24 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 2.856e-06/0.4072, allocations: 0 / 0.6298 GB, free: 37.24 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.003537/0.4108, allocations: 4.72 MB / 0.6344 GB, free: 33.9 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001698/0.411, allocations: 1.177 MB / 0.6355 GB, free: 32.51 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005452/0.4115, allocations: 0.7924 MB / 0.6363 GB, free: 32.2 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 9.018e-05/0.4116, allocations: 104.5 kB / 0.6364 GB, free: 32.12 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001706/0.4118, allocations: 386.1 kB / 0.6368 GB, free: 31.84 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002925/0.4121, allocations: 0.697 MB / 0.6374 GB, free: 31.29 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003489/0.4124, allocations: 375.9 kB / 0.6378 GB, free: 31.14 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 2.89e-05/0.4124, allocations: 310.6 kB / 0.6381 GB, free: 30.84 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004451/0.4129, allocations: 0.8012 MB / 0.6389 GB, free: 30.17 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005868/0.4135, allocations: 1.434 MB / 0.6403 GB, free: 28.68 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001312/0.4148, allocations: 2.781 MB / 0.643 GB, free: 26.27 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.686e-06/0.4148, allocations: 4.281 kB / 0.643 GB, free: 26.27 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.001409/0.4162, allocations: 2.111 MB / 0.6451 GB, free: 24.8 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001146/0.4163, allocations: 0.5134 MB / 0.6456 GB, free: 24.2 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.794e-05/0.4163, allocations: 20.59 kB / 0.6456 GB, free: 24.2 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.933e-05/0.4164, allocations: 28 kB / 0.6456 GB, free: 24.2 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008524/0.4172, allocations: 0.4931 MB / 0.6461 GB, free: 24.12 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.29e-05/0.4172, allocations: 39.11 kB / 0.6461 GB, free: 24.11 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005333/0.4178, allocations: 122.9 kB / 0.6462 GB, free: 24.06 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.301e-05/0.4178, allocations: 79.41 kB / 0.6463 GB, free: 24.04 MB / 0.5262 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0006169/0.4185, allocations: 0.9655 MB / 0.6473 GB, free: 23.3 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001827/0.4186, allocations: 194.8 kB / 0.6474 GB, free: 23.24 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001397/0.4188, allocations: 155.2 kB / 0.6476 GB, free: 23.12 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.145e-05/0.4188, allocations: 22.3 kB / 0.6476 GB, free: 23.12 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.623e-05/0.4188, allocations: 2.75 kB / 0.6476 GB, free: 23.12 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.096e-05/0.4188, allocations: 10.78 kB / 0.6476 GB, free: 23.11 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002295/0.4211, allocations: 3.041 MB / 0.6506 GB, free: 21.07 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.769e-06/0.4211, allocations: 2.688 kB / 0.6506 GB, free: 21.07 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007673/0.4219, allocations: 323.7 kB / 0.6509 GB, free: 21.01 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.538e-06/0.4219, allocations: 10.91 kB / 0.6509 GB, free: 21 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.517e-05/0.422, allocations: 70.89 kB / 0.651 GB, free: 20.96 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.264e-06/0.422, allocations: 10.25 kB / 0.651 GB, free: 20.96 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.285e-06/0.422, allocations: 1.625 kB / 0.651 GB, free: 20.96 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001633/0.4236, allocations: 2.897 MB / 0.6538 GB, free: 18.83 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003756/0.424, allocations: 183.5 kB / 0.654 GB, free: 18.72 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002054/0.4242, allocations: 110 kB / 0.6541 GB, free: 18.66 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004747/0.4247, allocations: 85.06 kB / 0.6542 GB, free: 18.62 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002263/0.4249, allocations: 190.9 kB / 0.6544 GB, free: 18.49 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.035e-05/0.425, allocations: 55.34 kB / 0.6544 GB, free: 18.47 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002935/0.4253, allocations: 397.9 kB / 0.6548 GB, free: 18.34 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.4253, allocations: 0 / 0.6548 GB, free: 18.34 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0008754/0.4262, allocations: 491.8 kB / 0.6553 GB, free: 18.28 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002258/0.4264, allocations: 293.7 kB / 0.6556 GB, free: 18.11 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001213/0.4276, allocations: 2.845 MB / 0.6583 GB, free: 15.75 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.042e-05/0.4276, allocations: 12.91 kB / 0.6583 GB, free: 15.75 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0005825/0.4282, allocations: 1.555 MB / 0.6599 GB, free: 14.41 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001328/0.4295, allocations: 0.562 MB / 0.6604 GB, free: 14.21 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003578/0.4331, allocations: 3.565 MB / 0.6639 GB, free: 11.95 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001884/0.4333, allocations: 300.6 kB / 0.6642 GB, free: 11.7 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0004826/0.4338, allocations: 187.5 kB / 0.6644 GB, free: 11.52 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0008113/0.4346, allocations: 0.5999 MB / 0.6649 GB, free: 10.92 MB / 0.5262 GB Notification: Performance of SimCode: time 9.62e-07/0.4346, allocations: 7.938 kB / 0.6649 GB, free: 10.91 MB / 0.5262 GB Notification: Performance of Templates: time 0.03237/0.4669, allocations: 32.76 MB / 0.6969 GB, free: 12.22 MB / 0.5574 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.362553676124662]