Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007994/0.0007994, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009796/0.0009796, allocations: 177.3 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9721/0.9721, allocations: 177.1 MB / 203.8 MB, free: 5.492 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.63/1.63, allocations: 273.5 MB / 0.5213 GB, free: 14.71 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.543e-06/1.543e-06, allocations: 0 / 0.5954 GB, free: 2.812 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.776e-05/1.931e-05, allocations: 2.312 kB / 0.5954 GB, free: 2.809 MB / 0.5105 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001562/0.001582, allocations: 1.304 MB / 0.5967 GB, free: 1.508 MB / 0.5105 GB
Notification: Performance of NFInst.instExpressions: time 0.0001783/0.00176, allocations: 61.05 kB / 0.5967 GB, free: 1.449 MB / 0.5105 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.906e-05/0.001789, allocations: 0 / 0.5967 GB, free: 1.449 MB / 0.5105 GB
Notification: Performance of NFTyping.typeComponents: time 7.702e-05/0.001866, allocations: 3.938 kB / 0.5967 GB, free: 1.445 MB / 0.5105 GB
Notification: Performance of NFTyping.typeBindings: time 3.75e-05/0.001903, allocations: 1.312 kB / 0.5967 GB, free: 1.445 MB / 0.5105 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001381/0.002042, allocations: 9.516 kB / 0.5967 GB, free: 1.438 MB / 0.5105 GB
Notification: Performance of NFFlatten.flatten: time 0.0001404/0.002182, allocations: 153 kB / 0.5969 GB, free: 1.293 MB / 0.5105 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.049e-05/0.002222, allocations: 11.86 kB / 0.5969 GB, free: 1.281 MB / 0.5105 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001037/0.002326, allocations: 77.23 kB / 0.597 GB, free: 1.207 MB / 0.5105 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000138/0.002464, allocations: 81.17 kB / 0.597 GB, free: 1.129 MB / 0.5105 GB
Notification: Performance of NFPackage.collectConstants: time 2.51e-05/0.002489, allocations: 8 kB / 0.5971 GB, free: 1.121 MB / 0.5105 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.583e-05/0.002505, allocations: 8 kB / 0.5971 GB, free: 1.113 MB / 0.5105 GB
Notification: Performance of NFScalarize.scalarize: time 3.264e-05/0.002538, allocations: 30.58 kB / 0.5971 GB, free: 1.086 MB / 0.5105 GB
Notification: Performance of NFVerifyModel.verify: time 3.537e-05/0.002573, allocations: 34.67 kB / 0.5971 GB, free: 1.055 MB / 0.5105 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001034/0.002676, allocations: 94.53 kB / 0.5972 GB, free: 0.9648 MB / 0.5105 GB
Notification: Performance of FrontEnd - DAE generated: time 1.423e-06/0.002678, allocations: 4 kB / 0.5972 GB, free: 0.9609 MB / 0.5105 GB
Notification: Performance of FrontEnd: time 7.42e-07/0.002679, allocations: 0 / 0.5972 GB, free: 0.9609 MB / 0.5105 GB
Notification: Performance of Transformations before backend: time 3.336e-06/0.002682, allocations: 0 / 0.5972 GB, free: 0.9609 MB / 0.5105 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0007829/0.003465, allocations: 476.5 kB / 0.5977 GB, free: 480 kB / 0.5105 GB
Notification: Performance of prepare preOptimizeDAE: time 2.951e-05/0.003494, allocations: 12.03 kB / 0.5977 GB, free: 468 kB / 0.5105 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.162e-05/0.003526, allocations: 4.938 kB / 0.5977 GB, free: 464 kB / 0.5105 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001077/0.003634, allocations: 127 kB / 0.5978 GB, free: 312 kB / 0.5105 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.424e-06/0.003641, allocations: 4.375 kB / 0.5978 GB, free: 308 kB / 0.5105 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.481e-05/0.003656, allocations: 4.375 kB / 0.5978 GB, free: 304 kB / 0.5105 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.000225/0.003881, allocations: 145.8 kB / 0.598 GB, free: 144 kB / 0.5105 GB
Notification: Performance of preOpt findStateOrder (simulation): time 6.011e-06/0.003887, allocations: 192 / 0.598 GB, free: 144 kB / 0.5105 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.144e-05/0.003898, allocations: 8.375 kB / 0.598 GB, free: 136 kB / 0.5105 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.937e-06/0.003902, allocations: 384 / 0.598 GB, free: 136 kB / 0.5105 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 6.328e-05/0.003966, allocations: 27.86 kB / 0.598 GB, free: 108 kB / 0.5105 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001956/0.004161, allocations: 173.5 kB / 0.5982 GB, free: 15.91 MB / 0.5261 GB
Notification: Performance of preOpt comSubExp (simulation): time 5.899e-05/0.00422, allocations: 26.61 kB / 0.5982 GB, free: 15.88 MB / 0.5261 GB
Notification: Performance of preOpt resolveLoops (simulation): time 5.088e-05/0.004271, allocations: 28.78 kB / 0.5982 GB, free: 15.85 MB / 0.5261 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.048e-05/0.004281, allocations: 4 kB / 0.5982 GB, free: 15.85 MB / 0.5261 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.79e-05/0.004299, allocations: 31.98 kB / 0.5982 GB, free: 15.81 MB / 0.5261 GB
Notification: Performance of pre-optimization done (n=11): time 1.362e-06/0.004301, allocations: 11.33 kB / 0.5983 GB, free: 15.8 MB / 0.5261 GB
Notification: Performance of matching and sorting (n=11): time 0.0001793/0.00448, allocations: 82.91 kB / 0.5983 GB, free: 15.71 MB / 0.5261 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.832e-05/0.004508, allocations: 59.34 kB / 0.5984 GB, free: 15.64 MB / 0.5261 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 5.518e-05/0.004564, allocations: 110.7 kB / 0.5985 GB, free: 15.52 MB / 0.5261 GB
Notification: Performance of collectPreVariables (initialization): time 1.422e-05/0.004578, allocations: 25.7 kB / 0.5985 GB, free: 15.49 MB / 0.5261 GB
Notification: Performance of collectInitialEqns (initialization): time 3.591e-05/0.004614, allocations: 93.64 kB / 0.5986 GB, free: 15.4 MB / 0.5261 GB
Notification: Performance of collectInitialBindings (initialization): time 2.108e-05/0.004635, allocations: 31.7 kB / 0.5986 GB, free: 15.37 MB / 0.5261 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.252e-05/0.004677, allocations: 33.64 kB / 0.5987 GB, free: 15.33 MB / 0.5261 GB
Notification: Performance of setup shared object (initialization): time 7.497e-05/0.004752, allocations: 330.8 kB / 0.599 GB, free: 15 MB / 0.5261 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.56e-05/0.004788, allocations: 11.94 kB / 0.599 GB, free: 14.99 MB / 0.5261 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 4.206e-05/0.00483, allocations: 26.08 kB / 0.599 GB, free: 14.96 MB / 0.5261 GB
Notification: Performance of analyzeInitialSystem (initialization): time 8.388e-05/0.004914, allocations: 57.75 kB / 0.5991 GB, free: 14.89 MB / 0.5261 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.234e-06/0.004916, allocations: 0 / 0.5991 GB, free: 14.89 MB / 0.5261 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.000114/0.00503, allocations: 74.91 kB / 0.5992 GB, free: 14.82 MB / 0.5261 GB
Notification: Performance of prepare postOptimizeDAE: time 1.144e-05/0.005041, allocations: 12.28 kB / 0.5992 GB, free: 14.81 MB / 0.5261 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.737e-06/0.005045, allocations: 0 / 0.5992 GB, free: 14.81 MB / 0.5261 GB
Notification: Performance of postOpt tearingSystem (initialization): time 8.967e-06/0.005054, allocations: 0 / 0.5992 GB, free: 14.81 MB / 0.5261 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001933/0.005248, allocations: 79.89 kB / 0.5992 GB, free: 14.73 MB / 0.5261 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.575e-06/0.00525, allocations: 0 / 0.5992 GB, free: 14.73 MB / 0.5261 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001288/0.005379, allocations: 55.95 kB / 0.5993 GB, free: 14.68 MB / 0.5261 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.025e-05/0.005389, allocations: 3.984 kB / 0.5993 GB, free: 14.67 MB / 0.5261 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 6.457e-05/0.005454, allocations: 120.6 kB / 0.5994 GB, free: 14.54 MB / 0.5261 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.48e-05/0.005469, allocations: 7.938 kB / 0.5994 GB, free: 14.54 MB / 0.5261 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001915/0.00566, allocations: 149.9 kB / 0.5996 GB, free: 14.39 MB / 0.5261 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.633e-06/0.005662, allocations: 0 / 0.5996 GB, free: 14.39 MB / 0.5261 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.13e-06/0.005667, allocations: 4 kB / 0.5996 GB, free: 14.38 MB / 0.5261 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.605e-06/0.005669, allocations: 1.312 kB / 0.5996 GB, free: 14.38 MB / 0.5261 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001004/0.00577, allocations: 109.7 kB / 0.5997 GB, free: 14.26 MB / 0.5261 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.332e-06/0.005771, allocations: 4 kB / 0.5997 GB, free: 14.25 MB / 0.5261 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000179/0.00595, allocations: 79.88 kB / 0.5998 GB, free: 14.18 MB / 0.5261 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.342e-06/0.005951, allocations: 4 kB / 0.5998 GB, free: 14.17 MB / 0.5261 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.079e-05/0.005962, allocations: 7.984 kB / 0.5998 GB, free: 14.16 MB / 0.5261 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.002e-06/0.005963, allocations: 0 / 0.5998 GB, free: 14.16 MB / 0.5261 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.01e-07/0.005964, allocations: 0 / 0.5998 GB, free: 14.16 MB / 0.5261 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001397/0.006103, allocations: 129 kB / 0.5999 GB, free: 14.02 MB / 0.5261 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.156e-05/0.006115, allocations: 15.91 kB / 0.5999 GB, free: 14 MB / 0.5261 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.714e-05/0.006132, allocations: 3.938 kB / 0.5999 GB, free: 14 MB / 0.5261 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001268/0.006259, allocations: 59.94 kB / 0.6 GB, free: 13.94 MB / 0.5261 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.994e-05/0.006329, allocations: 25.59 kB / 0.6 GB, free: 13.92 MB / 0.5261 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.35e-05/0.006342, allocations: 4 kB / 0.6 GB, free: 13.91 MB / 0.5261 GB
Notification: Performance of sorting global known variables: time 1.871e-05/0.006361, allocations: 12.84 kB / 0.6 GB, free: 13.9 MB / 0.5261 GB
Notification: Performance of sort global known variables: time 8e-08/0.006361, allocations: 3.938 kB / 0.6 GB, free: 13.89 MB / 0.5261 GB
Notification: Performance of remove unused functions: time 0.0002064/0.006568, allocations: 32 kB / 0.6 GB, free: 13.86 MB / 0.5261 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 8.109e-05/0.006649, allocations: 80.41 kB / 0.6001 GB, free: 13.77 MB / 0.5261 GB
Notification: Performance of simCode: created initialization part: time 0.0001329/0.006782, allocations: 60.78 kB / 0.6002 GB, free: 13.71 MB / 0.5261 GB
Notification: Performance of simCode: created event and clocks part: time 5.761e-06/0.006787, allocations: 8 kB / 0.6002 GB, free: 13.7 MB / 0.5261 GB
Notification: Performance of simCode: created simulation system equations: time 6.593e-05/0.006853, allocations: 52.14 kB / 0.6002 GB, free: 13.65 MB / 0.5261 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 9.589e-05/0.006949, allocations: 12 kB / 0.6002 GB, free: 13.64 MB / 0.5261 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0004643/0.007413, allocations: 235.4 kB / 0.6005 GB, free: 13.38 MB / 0.5261 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.82e-05/0.007452, allocations: 69.28 kB / 0.6005 GB, free: 13.3 MB / 0.5261 GB
Notification: Performance of simCode: alias equations: time 5.903e-05/0.007511, allocations: 24.42 kB / 0.6006 GB, free: 13.27 MB / 0.5261 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001257/0.007636, allocations: 71.38 kB / 0.6006 GB, free: 13.2 MB / 0.5261 GB
Notification: Performance of SimCode: time 7.31e-07/0.007637, allocations: 0 / 0.6006 GB, free: 13.2 MB / 0.5261 GB
Notification: Performance of Templates: time 0.003854/0.01149, allocations: 2.599 MB / 0.6032 GB, free: 10.67 MB / 0.5261 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.670173219870776]