Environment - simulationEnvironment:
startTime=0
stopTime=5
tolerance=1e-12
numberOfIntervals=1000
stepSize=0.005
Regular simulation: ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.050000
|                 | |       | ((SusceptibleCells.state >= 0.0)) --> "Variable violating min constraint: 0.0 <= SusceptibleCells.state, has value: -1.23168e-13"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |   0.00122833s          reading init.xml
|                 | |       | | |  0.000137098s          reading info.xml
|                 | |       | | |  0.000185439s [  4.0%] pre-initialization
|                 | |       | | |   4.8491e-05s [  1.0%] initialization
|                 | |       | | |    3.717e-06s [  0.1%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |    5.358e-06s [  0.1%] event-handling
|                 | |       | | |   4.9236e-05s [  1.1%] overhead
|                 | |       | | |   0.00434094s [ 93.7%] simulation
|                 | |       | | |   0.00463318s [100.0%] total
|                 | |       | | events
|                 | |       | | |     0 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |  3100 steps taken
|                 | |       | | | 15564 calls of functionODE
|                 | |       | | |    47 evaluations of jacobian
|                 | |       | | |     0 error test failures
|                 | |       | | |     1 convergence test failures
|                 | |       | | | 1.1391e-05s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.