Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001119/0.001119, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001671/0.001671, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9562/0.9562, allocations: 177.1 MB / 203.8 MB, free: 5.484 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.589/1.589, allocations: 273.5 MB / 0.5213 GB, free: 14.61 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.633e-06/1.633e-06, allocations: 0 / 0.5954 GB, free: 2.699 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.667e-05/1.83e-05, allocations: 10.25 kB / 0.5954 GB, free: 2.688 MB / 0.5105 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.4217/0.4217, allocations: 49.74 MB / 0.644 GB, free: 24.84 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.004093/0.4258, allocations: 5.168 MB / 0.649 GB, free: 21.01 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.000125/0.4259, allocations: 26.69 kB / 0.649 GB, free: 21 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001248/0.426, allocations: 58.83 kB / 0.6491 GB, free: 20.94 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001027/0.427, allocations: 0.7774 MB / 0.6499 GB, free: 20.42 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.0009688/0.428, allocations: 0.8454 MB / 0.6507 GB, free: 19.86 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003298/0.4283, allocations: 0.5086 MB / 0.6512 GB, free: 19.55 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001636/0.4285, allocations: 186.4 kB / 0.6514 GB, free: 19.41 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001455/0.4287, allocations: 252.6 kB / 0.6516 GB, free: 19.26 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001381/0.4288, allocations: 142.3 kB / 0.6517 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.629e-05/0.4288, allocations: 25.44 kB / 0.6518 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.903e-05/0.4288, allocations: 29.09 kB / 0.6518 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.335e-05/0.4289, allocations: 74.16 kB / 0.6519 GB, free: 19.12 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 7.195e-05/0.429, allocations: 140.9 kB / 0.652 GB, free: 19.05 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.000209/0.4292, allocations: 329.6 kB / 0.6523 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.516e-06/0.4292, allocations: 0 / 0.6523 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.183e-06/0.4292, allocations: 0 / 0.6523 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.058e-06/0.4292, allocations: 0 / 0.6523 GB, free: 18.84 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0004427/0.4296, allocations: 0.5966 MB / 0.6529 GB, free: 18.35 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 2.68e-05/0.4296, allocations: 10.81 kB / 0.6529 GB, free: 18.35 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.63e-05/0.4297, allocations: 49.48 kB / 0.6529 GB, free: 18.33 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002969/0.43, allocations: 331.8 kB / 0.6533 GB, free: 18.09 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.951e-05/0.43, allocations: 23.69 kB / 0.6533 GB, free: 18.07 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.657e-05/0.43, allocations: 30.27 kB / 0.6533 GB, free: 18.06 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001515/0.4302, allocations: 168.3 kB / 0.6535 GB, free: 17.95 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.08e-05/0.4302, allocations: 7.531 kB / 0.6535 GB, free: 17.95 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.021e-05/0.4302, allocations: 4 kB / 0.6535 GB, free: 17.94 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.903e-06/0.4302, allocations: 6.938 kB / 0.6535 GB, free: 17.94 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 6.642e-05/0.4303, allocations: 66.19 kB / 0.6536 GB, free: 17.93 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0005435/0.4308, allocations: 483.3 kB / 0.654 GB, free: 17.61 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001157/0.4309, allocations: 147.8 kB / 0.6542 GB, free: 17.51 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 3.899e-05/0.431, allocations: 45.66 kB / 0.6542 GB, free: 17.49 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.621e-05/0.431, allocations: 11.44 kB / 0.6542 GB, free: 17.48 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.3e-05/0.431, allocations: 34.28 kB / 0.6542 GB, free: 17.44 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.272e-06/0.431, allocations: 0 / 0.6542 GB, free: 17.44 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=20): time 0.0001539/0.4312, allocations: 122.7 kB / 0.6544 GB, free: 17.39 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.779e-05/0.4312, allocations: 58.72 kB / 0.6544 GB, free: 17.32 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001259/0.4313, allocations: 332.8 kB / 0.6547 GB, free: 17.1 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 9.407e-06/0.4313, allocations: 29.7 kB / 0.6548 GB, free: 17.06 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 4.638e-05/0.4314, allocations: 186.5 kB / 0.6549 GB, free: 16.89 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.773e-05/0.4314, allocations: 78.05 kB / 0.655 GB, free: 16.83 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.801e-05/0.4314, allocations: 79.45 kB / 0.6551 GB, free: 16.77 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 3.633e-05/0.4315, allocations: 345.6 kB / 0.6554 GB, free: 16.43 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.426e-05/0.4315, allocations: 32.62 kB / 0.6555 GB, free: 16.42 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.386e-05/0.4316, allocations: 88.89 kB / 0.6555 GB, free: 16.35 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001759/0.4317, allocations: 200.5 kB / 0.6557 GB, free: 16.24 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.304e-06/0.4317, allocations: 4 kB / 0.6557 GB, free: 16.24 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.000146/0.4319, allocations: 177.5 kB / 0.6559 GB, free: 16.16 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.056e-05/0.4319, allocations: 7.625 kB / 0.6559 GB, free: 16.16 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.827e-06/0.4319, allocations: 0 / 0.6559 GB, free: 16.16 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.336e-05/0.4319, allocations: 3.656 kB / 0.6559 GB, free: 16.16 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001401/0.4321, allocations: 74.62 kB / 0.656 GB, free: 16.14 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.38e-06/0.4321, allocations: 7.844 kB / 0.656 GB, free: 16.14 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 6.072e-05/0.4321, allocations: 34.97 kB / 0.656 GB, free: 16.11 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.011e-05/0.4321, allocations: 11.22 kB / 0.656 GB, free: 16.11 MB / 0.5262 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.921e-05/0.4322, allocations: 131.8 kB / 0.6562 GB, free: 15.97 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.627e-05/0.4322, allocations: 22.45 kB / 0.6562 GB, free: 15.96 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001238/0.4324, allocations: 132.5 kB / 0.6563 GB, free: 15.88 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.316e-06/0.4324, allocations: 7.531 kB / 0.6563 GB, free: 15.88 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.773e-06/0.4324, allocations: 0 / 0.6563 GB, free: 15.88 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.918e-06/0.4324, allocations: 0 / 0.6563 GB, free: 15.88 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001517/0.4325, allocations: 183.1 kB / 0.6565 GB, free: 15.74 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.52e-07/0.4325, allocations: 0 / 0.6565 GB, free: 15.74 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.447e-05/0.4326, allocations: 37.61 kB / 0.6565 GB, free: 15.73 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.923e-06/0.4326, allocations: 3.812 kB / 0.6565 GB, free: 15.73 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.299e-05/0.4326, allocations: 4 kB / 0.6565 GB, free: 15.73 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.01e-07/0.4326, allocations: 0 / 0.6565 GB, free: 15.73 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.92e-07/0.4326, allocations: 0 / 0.6565 GB, free: 15.73 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001482/0.4328, allocations: 299.5 kB / 0.6568 GB, free: 15.5 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 4.942e-05/0.4328, allocations: 46.11 kB / 0.6569 GB, free: 15.47 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.902e-05/0.4329, allocations: 7.562 kB / 0.6569 GB, free: 15.47 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 5.516e-05/0.4329, allocations: 0 / 0.6569 GB, free: 15.47 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.399e-05/0.4329, allocations: 19.75 kB / 0.6569 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.1e-06/0.4329, allocations: 7.594 kB / 0.6569 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 5.834e-05/0.433, allocations: 117.7 kB / 0.657 GB, free: 15.39 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 4e-08/0.433, allocations: 0 / 0.657 GB, free: 15.39 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001632/0.4332, allocations: 81.17 kB / 0.6571 GB, free: 15.38 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 7.334e-05/0.4332, allocations: 89 kB / 0.6572 GB, free: 15.3 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001261/0.4334, allocations: 123.9 kB / 0.6573 GB, free: 15.27 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 3.637e-06/0.4334, allocations: 4.312 kB / 0.6573 GB, free: 15.27 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 3.819e-05/0.4334, allocations: 62.69 kB / 0.6574 GB, free: 15.24 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002142/0.4336, allocations: 70.45 kB / 0.6574 GB, free: 15.2 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0006909/0.4343, allocations: 0.5906 MB / 0.658 GB, free: 14.77 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.771e-05/0.4343, allocations: 100.9 kB / 0.6581 GB, free: 14.68 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 7.206e-05/0.4344, allocations: 40.28 kB / 0.6581 GB, free: 14.66 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001028/0.4345, allocations: 120.6 kB / 0.6582 GB, free: 14.6 MB / 0.5262 GB
Notification: Performance of SimCode: time 8.12e-07/0.4345, allocations: 0 / 0.6582 GB, free: 14.6 MB / 0.5262 GB
Notification: Performance of Templates: time 0.004757/0.4393, allocations: 3.67 MB / 0.6618 GB, free: 12.95 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.656920224893838]