Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009782/0.0009782, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001024/0.001024, allocations: 181 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9263/0.9263, allocations: 177.1 MB / 203.8 MB, free: 5.457 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.0859/0.0859, allocations: 17.46 MB / 277.7 MB, free: 11.41 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.HydrogenCombustion,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion")
translateModel(Chemical.Obsolete.Examples.HydrogenCombustion,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.503e-06/1.503e-06, allocations: 0 / 300.7 MB, free: 1.734 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.224e-05/1.375e-05, allocations: 4.172 kB / 300.7 MB, free: 1.73 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.HydrogenCombustion): time 0.03763/0.03765, allocations: 37.81 MB / 338.5 MB, free: 14.54 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.2726/0.3102, allocations: 136.5 MB / 475 MB, free: 26.38 MB / 410.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00109/0.3113, allocations: 30.56 kB / 475 MB, free: 26.36 MB / 410.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.000725/0.312, allocations: 373.8 kB / 475.4 MB, free: 26.2 MB / 410.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.002134/0.3142, allocations: 1.169 MB / 476.6 MB, free: 26.02 MB / 410.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.002732/0.3169, allocations: 1.586 MB / 478.1 MB, free: 25.83 MB / 410.7 MB
Notification: Performance of NFFlatten.flatten: time 0.00206/0.319, allocations: 2.688 MB / 480.8 MB, free: 25.39 MB / 410.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0009303/0.3199, allocations: 1.284 MB / 482.1 MB, free: 25.22 MB / 410.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001077/0.321, allocations: 1.77 MB / 483.9 MB, free: 25.12 MB / 410.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0008709/0.3219, allocations: 1.152 MB / 485 MB, free: 25.04 MB / 410.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002093/0.3221, allocations: 228.8 kB / 485.3 MB, free: 25.04 MB / 410.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.001562/0.3236, allocations: 1.026 MB / 486.3 MB, free: 24.95 MB / 410.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002956/0.3239, allocations: 0.5832 MB / 486.9 MB, free: 24.87 MB / 410.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0004928/0.3244, allocations: 0.8477 MB / 487.7 MB, free: 24.78 MB / 410.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001903/0.3263, allocations: 2.964 MB / 490.7 MB, free: 24.32 MB / 410.7 MB
Notification: Performance of FrontEnd - DAE generated: time 2.455e-06/0.3263, allocations: 0 / 490.7 MB, free: 24.32 MB / 410.7 MB
Notification: Performance of FrontEnd: time 1.082e-06/0.3263, allocations: 0 / 490.7 MB, free: 24.32 MB / 410.7 MB
Notification: Performance of Transformations before backend: time 1.44e-05/0.3263, allocations: 2.578 kB / 490.7 MB, free: 24.32 MB / 410.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 492
 * Number of variables: 492
Notification: Performance of Generate backend data structure: time 0.001995/0.3283, allocations: 2.495 MB / 493.2 MB, free: 23.25 MB / 410.7 MB
Notification: Performance of prepare preOptimizeDAE: time 2.911e-05/0.3284, allocations: 10.61 kB / 493.2 MB, free: 23.25 MB / 410.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002101/0.3305, allocations: 1.237 MB / 494.4 MB, free: 23.01 MB / 410.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007397/0.3312, allocations: 0.721 MB / 495.2 MB, free: 22.63 MB / 410.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.782e-05/0.3313, allocations: 255.8 kB / 495.4 MB, free: 22.5 MB / 410.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001739/0.3315, allocations: 201.3 kB / 495.6 MB, free: 22.5 MB / 410.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001202/0.3327, allocations: 1.581 MB / 497.2 MB, free: 22.04 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.882e-05/0.3327, allocations: 2.156 kB / 497.2 MB, free: 22.04 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001048/0.3328, allocations: 77.81 kB / 497.3 MB, free: 22.04 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.334e-05/0.3328, allocations: 51 kB / 497.3 MB, free: 22.04 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001035/0.3339, allocations: 1.1 MB / 498.4 MB, free: 21.77 MB / 410.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004184/0.338, allocations: 4.815 MB / 0.4914 GB, free: 18.96 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001379/0.3394, allocations: 1.216 MB / 0.4926 GB, free: 18.46 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003153/0.3397, allocations: 396.2 kB / 0.493 GB, free: 18.37 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.002474/0.3422, allocations: 2.462 MB / 0.4954 GB, free: 17.14 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.147e-05/0.3422, allocations: 45.81 kB / 0.4954 GB, free: 17.1 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=132): time 2.194e-06/0.3422, allocations: 0 / 0.4954 GB, free: 17.1 MB / 410.7 MB
Notification: Performance of matching and sorting (n=174): time 0.006799/0.349, allocations: 4.735 MB / 0.5001 GB, free: 14.99 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.728e-05/0.3491, allocations: 99.02 kB / 0.5002 GB, free: 14.89 MB / 410.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003861/0.3495, allocations: 0.811 MB / 0.501 GB, free: 14.55 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 6.778e-05/0.3495, allocations: 55.42 kB / 0.501 GB, free: 14.5 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002029/0.3497, allocations: 0.7926 MB / 0.5018 GB, free: 13.86 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002218/0.3499, allocations: 0.6165 MB / 0.5024 GB, free: 13.35 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002928/0.3502, allocations: 391.7 kB / 0.5028 GB, free: 13.16 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 2.414e-05/0.3503, allocations: 304.4 kB / 0.503 GB, free: 12.86 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002828/0.3505, allocations: 259 kB / 0.5033 GB, free: 12.81 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004142/0.351, allocations: 0.8295 MB / 0.5041 GB, free: 12.07 MB / 410.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0008141/0.3518, allocations: 1.353 MB / 0.5054 GB, free: 11.11 MB / 410.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.663e-06/0.3518, allocations: 5.781 kB / 0.5054 GB, free: 11.11 MB / 410.7 MB
Notification: Performance of matching and sorting (n=262) (initialization): time 0.001535/0.3533, allocations: 1.508 MB / 0.5069 GB, free: 10.47 MB / 410.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.867e-05/0.3533, allocations: 18 kB / 0.5069 GB, free: 10.47 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.259e-05/0.3533, allocations: 19.16 kB / 0.5069 GB, free: 10.47 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.0009082/0.3543, allocations: 0.502 MB / 0.5074 GB, free: 10.25 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009022/0.3552, allocations: 468.6 kB / 0.5079 GB, free: 10.14 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.002951/0.3581, allocations: 7.345 MB / 0.515 GB, free: 3.383 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004455/0.3586, allocations: 67.27 kB / 0.5151 GB, free: 3.344 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001184/0.3587, allocations: 130.6 kB / 0.5152 GB, free: 3.316 MB / 410.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 80
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (208):
 * Single equations (assignments): 202
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 6
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 3 systems
   {(1,9,100.0%), (1,11,100.0%), (1,6,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,6), (1,10), (1,12)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002845/0.359, allocations: 240.8 kB / 0.5155 GB, free: 3.098 MB / 410.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001595/0.3591, allocations: 145.4 kB / 0.5156 GB, free: 3.039 MB / 410.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.001828/0.3609, allocations: 1.616 MB / 0.5172 GB, free: 1.855 MB / 410.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.472e-06/0.3609, allocations: 20 kB / 0.5172 GB, free: 1.836 MB / 410.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.378e-06/0.361, allocations: 7.938 kB / 0.5172 GB, free: 1.828 MB / 410.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.148e-05/0.361, allocations: 15.95 kB / 0.5172 GB, free: 1.812 MB / 410.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002371/0.3633, allocations: 2.459 MB / 0.5196 GB, free: 15.55 MB / 426.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.837e-06/0.3633, allocations: 0 / 0.5196 GB, free: 15.55 MB / 426.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008484/0.3642, allocations: 355.7 kB / 0.52 GB, free: 15.2 MB / 426.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.000856/0.365, allocations: 448.5 kB / 0.5204 GB, free: 14.76 MB / 426.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.47e-05/0.3651, allocations: 59.97 kB / 0.5204 GB, free: 14.7 MB / 426.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.002555/0.3677, allocations: 5.255 MB / 0.5256 GB, free: 9.191 MB / 426.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.098e-06/0.3677, allocations: 7.938 kB / 0.5256 GB, free: 9.184 MB / 426.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002019/0.3697, allocations: 1.789 MB / 0.5273 GB, free: 7.395 MB / 426.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 9.842e-05/0.3698, allocations: 129.6 kB / 0.5275 GB, free: 7.27 MB / 426.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001202/0.3699, allocations: 39.98 kB / 0.5275 GB, free: 7.23 MB / 426.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000336/0.3703, allocations: 36 kB / 0.5275 GB, free: 7.195 MB / 426.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001742/0.3704, allocations: 161.7 kB / 0.5277 GB, free: 7.035 MB / 426.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.649e-05/0.3705, allocations: 91.97 kB / 0.5278 GB, free: 6.945 MB / 426.7 MB
Notification: Performance of sorting global known variables: time 0.0002517/0.3708, allocations: 377.3 kB / 0.5281 GB, free: 6.613 MB / 426.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.3708, allocations: 0 / 0.5281 GB, free: 6.613 MB / 426.7 MB
Notification: Performance of remove unused functions: time 0.001195/0.372, allocations: 0.6322 MB / 0.5287 GB, free: 5.98 MB / 426.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 6
 * Number of states: 8 (H2_gas.logn,O2_gas.logn,H2O_gas.molarVolume,H2O_gas.logn,H2_gas1.logn,O2_gas1.logn,H2O_gas1.molarVolume,H2O_gas1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (153):
 * Single equations (assignments): 148
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 3 systems
   {(1,9,100.0%), (1,6,100.0%), (1,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,10), (1,8)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0006114/0.3726, allocations: 441.3 kB / 0.5292 GB, free: 5.578 MB / 426.7 MB
Notification: Performance of simCode: created initialization part: time 0.001439/0.374, allocations: 1.697 MB / 0.5308 GB, free: 3.859 MB / 426.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.143e-05/0.374, allocations: 21.75 kB / 0.5308 GB, free: 3.836 MB / 426.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.000808/0.3748, allocations: 1.033 MB / 0.5319 GB, free: 2.781 MB / 426.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007461/0.3756, allocations: 321.8 kB / 0.5322 GB, free: 2.492 MB / 426.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003659/0.3793, allocations: 3.139 MB / 0.5352 GB, free: 15.34 MB / 442.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002473/0.3795, allocations: 366.6 kB / 0.5356 GB, free: 14.95 MB / 442.7 MB
Notification: Performance of simCode: alias equations: time 0.0008158/0.3803, allocations: 416.8 kB / 0.536 GB, free: 14.57 MB / 442.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007561/0.3811, allocations: 490.9 kB / 0.5364 GB, free: 14.09 MB / 442.7 MB
Notification: Performance of SimCode: time 6.31e-07/0.3811, allocations: 0 / 0.5364 GB, free: 14.09 MB / 442.7 MB
Notification: Performance of Templates: time 0.03467/0.4157, allocations: 33.65 MB / 0.5693 GB, free: 12.94 MB / 474.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.sim & ./Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.021795131266117]