Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008765/0.0008765, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009115/0.0009115, allocations: 173 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.899/0.899, allocations: 177.1 MB / 203.8 MB, free: 5.504 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.0948/0.0948, allocations: 17.47 MB / 277.7 MB, free: 11.46 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.102e-06/1.102e-06, allocations: 0 / 300.7 MB, free: 1.781 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.042e-05/1.152e-05, allocations: 2.312 kB / 300.7 MB, free: 1.777 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.05911/0.05912, allocations: 84.37 MB / 385.1 MB, free: 15.88 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.2184/0.2775, allocations: 66.57 MB / 451.7 MB, free: 27.98 MB / 410.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01002/0.2875, allocations: 228.7 kB / 451.9 MB, free: 27.98 MB / 410.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006996/0.2945, allocations: 2.766 MB / 454.7 MB, free: 27.98 MB / 410.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.02135/0.3159, allocations: 9.456 MB / 464.1 MB, free: 26.16 MB / 410.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.02284/0.3387, allocations: 14.89 MB / 479 MB, free: 24.68 MB / 410.7 MB
Notification: Performance of NFFlatten.flatten: time 0.05807/0.3968, allocations: 91.24 MB / 0.5569 GB, free: 7.277 MB / 458.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.05467/0.4515, allocations: 55 MB / 0.6106 GB, free: 3.223 MB / 0.4948 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.4179/0.8693, allocations: 75.03 MB / 0.6839 GB, free: 21.48 MB / 0.4949 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0739/0.9432, allocations: 50.96 MB / 0.7336 GB, free: 10.85 MB / 0.5105 GB
Notification: Performance of NFPackage.collectConstants: time 0.0354/0.9786, allocations: 12.21 MB / 0.7455 GB, free: 14.64 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.04976/1.028, allocations: 17.33 MB / 0.7625 GB, free: 13.91 MB / 0.5418 GB
Notification: Performance of NFScalarize.scalarize: time 0.03914/1.068, allocations: 24.29 MB / 0.7862 GB, free: 9.07 MB / 0.5574 GB
Notification: Performance of NFVerifyModel.verify: time 0.05832/1.126, allocations: 31.11 MB / 0.8166 GB, free: 13.4 MB / 0.5887 GB
Notification: Performance of NFConvertDAE.convert: time 0.4644/1.59, allocations: 86.99 MB / 0.9015 GB, free: 62.82 MB / 0.5888 GB
Notification: Performance of FrontEnd - DAE generated: time 6.572e-06/1.59, allocations: 3.75 kB / 0.9015 GB, free: 62.82 MB / 0.5888 GB
Notification: Performance of FrontEnd: time 1.192e-06/1.59, allocations: 0 / 0.9015 GB, free: 62.82 MB / 0.5888 GB
Notification: Performance of Transformations before backend: time 0.002945/1.593, allocations: 0.5938 kB / 0.9015 GB, free: 62.82 MB / 0.5888 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.1444/1.738, allocations: 57.97 MB / 0.9581 GB, free: 44.55 MB / 0.5888 GB
Notification: Performance of prepare preOptimizeDAE: time 3.559e-05/1.738, allocations: 8.344 kB / 0.9581 GB, free: 44.55 MB / 0.5888 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.06447/1.802, allocations: 18.78 MB / 0.9765 GB, free: 33.91 MB / 0.5888 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.04994/1.852, allocations: 20.24 MB / 0.9963 GB, free: 17.59 MB / 0.5888 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.004268/1.856, allocations: 9.192 MB / 1.005 GB, free: 8.602 MB / 0.5888 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.02171/1.878, allocations: 4.569 MB / 1.01 GB, free: 5.547 MB / 0.5888 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.3482/2.226, allocations: 52.66 MB / 1.061 GB, free: 154.4 MB / 0.62 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.001584/2.228, allocations: 26.16 kB / 1.061 GB, free: 154.4 MB / 0.62 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0145/2.242, allocations: 1.763 MB / 1.063 GB, free: 154.4 MB / 0.62 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0007764/2.243, allocations: 1.057 MB / 1.064 GB, free: 154.4 MB / 0.62 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0879/2.331, allocations: 45.82 MB / 1.109 GB, free: 153.2 MB / 0.62 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.3821/2.713, allocations: 173.7 MB / 1.278 GB, free: 12.1 MB / 0.62 GB
Notification: Performance of preOpt comSubExp (simulation): time 1.997/4.71, allocations: 0.8793 GB / 2.158 GB, free: 8.531 MB / 0.62 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.2617/4.972, allocations: 16.32 MB / 2.174 GB, free: 140.8 MB / 0.62 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.2053/5.177, allocations: 91.22 MB / 2.263 GB, free: 127.8 MB / 0.62 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002103/5.177, allocations: 330.4 kB / 2.263 GB, free: 127.6 MB / 0.62 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.05694/5.234, allocations: 26.82 MB / 2.289 GB, free: 111.7 MB / 0.62 GB
Notification: Performance of pre-optimization done (n=2949): time 0.0001145/5.234, allocations: 0 / 2.289 GB, free: 111.7 MB / 0.62 GB
Notification: Performance of matching and sorting (n=3351): time 0.9922/6.226, allocations: 181.3 MB / 2.466 GB, free: 103.2 MB / 0.62 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001872/6.227, allocations: 443.6 kB / 2.467 GB, free: 103.1 MB / 0.62 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.02453/6.251, allocations: 22.59 MB / 2.489 GB, free: 98.65 MB / 0.62 GB
Notification: Performance of collectPreVariables (initialization): time 0.01094/6.262, allocations: 0.562 MB / 2.489 GB, free: 98.62 MB / 0.62 GB
Notification: Performance of collectInitialEqns (initialization): time 0.007769/6.27, allocations: 17.03 MB / 2.506 GB, free: 89.71 MB / 0.62 GB
Notification: Performance of collectInitialBindings (initialization): time 0.01603/6.286, allocations: 12.11 MB / 2.518 GB, free: 80.92 MB / 0.62 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.02357/6.309, allocations: 8.465 MB / 2.526 GB, free: 78.72 MB / 0.62 GB
Notification: Performance of setup shared object (initialization): time 3.129e-05/6.309, allocations: 308.8 kB / 2.526 GB, free: 78.42 MB / 0.62 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.02005/6.329, allocations: 8.855 MB / 2.535 GB, free: 77.18 MB / 0.62 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.02597/6.355, allocations: 21.53 MB / 2.556 GB, free: 59.5 MB / 0.62 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.05079/6.406, allocations: 36.33 MB / 2.591 GB, free: 22.8 MB / 0.62 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005642/6.407, allocations: 124 kB / 2.592 GB, free: 22.68 MB / 0.62 GB
Notification: Performance of matching and sorting (n=5583) (initialization): time 0.7807/7.188, allocations: 111 MB / 2.7 GB, free: 83.57 MB / 0.62 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002979/7.188, allocations: 192 kB / 2.7 GB, free: 83.57 MB / 0.62 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.000526/7.188, allocations: 438.7 kB / 2.701 GB, free: 83.56 MB / 0.62 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.4778/7.666, allocations: 154.5 MB / 2.851 GB, free: 137.5 MB / 0.6513 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03012/7.696, allocations: 10.39 MB / 2.862 GB, free: 137.5 MB / 0.6513 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.1656/7.862, allocations: 60.21 MB / 2.92 GB, free: 120.8 MB / 0.6513 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.03239/7.894, allocations: 1.397 MB / 2.922 GB, free: 120.1 MB / 0.6513 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01178/7.906, allocations: 2.117 MB / 2.924 GB, free: 119.7 MB / 0.6513 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1983
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5439):
 * Single equations (assignments): 5430
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.02786/7.934, allocations: 2.852 MB / 2.927 GB, free: 118.4 MB / 0.6513 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.01691/7.951, allocations: 2.76 MB / 2.929 GB, free: 118 MB / 0.6513 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.3553/8.306, allocations: 72.57 MB / 3 GB, free: 63.61 MB / 0.6513 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0002382/8.306, allocations: 356 kB / 3 GB, free: 63.26 MB / 0.6513 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0003338/8.307, allocations: 60 kB / 3.001 GB, free: 63.2 MB / 0.6513 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0008665/8.308, allocations: 182.4 kB / 3.001 GB, free: 63.02 MB / 0.6513 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.641/8.949, allocations: 103.2 MB / 3.101 GB, free: 98.97 MB / 0.6513 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002306/8.949, allocations: 10 kB / 3.101 GB, free: 98.97 MB / 0.6513 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02428/8.973, allocations: 6.653 MB / 3.108 GB, free: 98.97 MB / 0.6513 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1235/9.097, allocations: 51.25 MB / 3.158 GB, free: 96.39 MB / 0.6513 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.009581/9.106, allocations: 1.256 MB / 3.159 GB, free: 96.39 MB / 0.6513 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1247/9.231, allocations: 36.04 MB / 3.194 GB, free: 78.23 MB / 0.6513 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.143e-06/9.231, allocations: 18.12 kB / 3.194 GB, free: 78.23 MB / 0.6513 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.3624/9.593, allocations: 85.2 MB / 3.278 GB, free: 12.46 MB / 0.6513 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.02188/9.615, allocations: 4.216 MB / 3.282 GB, free: 10.3 MB / 0.6513 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01449/9.63, allocations: 0.894 MB / 3.283 GB, free: 9.664 MB / 0.6513 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.02558/9.655, allocations: 0.7537 MB / 3.283 GB, free: 8.91 MB / 0.6513 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01738/9.673, allocations: 3.635 MB / 3.287 GB, free: 5.27 MB / 0.6513 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.009812/9.683, allocations: 0.9743 MB / 3.288 GB, free: 4.297 MB / 0.6513 GB
Notification: Performance of sorting global known variables: time 0.2783/9.961, allocations: 11.33 MB / 3.299 GB, free: 116.3 MB / 0.6513 GB
Notification: Performance of sort global known variables: time 2.01e-07/9.961, allocations: 0 / 3.299 GB, free: 116.3 MB / 0.6513 GB
Notification: Performance of remove unused functions: time 0.06682/10.03, allocations: 15.41 MB / 3.314 GB, free: 116.3 MB / 0.6513 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3666):
 * Single equations (assignments): 3657
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.01424/10.04, allocations: 3.525 MB / 3.317 GB, free: 116.2 MB / 0.6513 GB
Notification: Performance of simCode: created initialization part: time 0.09119/10.13, allocations: 30.36 MB / 3.347 GB, free: 113.9 MB / 0.6513 GB
Notification: Performance of simCode: created event and clocks part: time 0.00132/10.13, allocations: 383.8 kB / 3.347 GB, free: 113.8 MB / 0.6513 GB
Notification: Performance of simCode: created simulation system equations: time 0.05135/10.19, allocations: 16.38 MB / 3.363 GB, free: 112.2 MB / 0.6513 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.04375/10.23, allocations: 8.026 MB / 3.371 GB, free: 111.5 MB / 0.6513 GB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.1561/10.39, allocations: 87.47 MB / 3.457 GB, free: 45.5 MB / 0.6513 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.02691/10.41, allocations: 10.48 MB / 3.467 GB, free: 38.31 MB / 0.6513 GB
Notification: Performance of simCode: alias equations: time 0.02573/10.44, allocations: 5.154 MB / 3.472 GB, free: 34.69 MB / 0.6513 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02492/10.46, allocations: 7.839 MB / 3.48 GB, free: 28.47 MB / 0.6513 GB
Notification: Performance of SimCode: time 1.774e-06/10.46, allocations: 0 / 3.48 GB, free: 28.47 MB / 0.6513 GB
Notification: Performance of Templates: time 2.088/12.55, allocations: 0.9684 GB / 4.448 GB, free: 137 MB / 0.6669 GB
"
[Timeout remaining time 647]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 32.85092257987708]