Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001179/0.001179, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001582/0.001582, allocations: 177.4 kB / 23.36 MB, free: 1.125 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9533/0.9533, allocations: 177.2 MB / 203.8 MB, free: 5.465 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09872/0.09872, allocations: 17.47 MB / 277.7 MB, free: 11.43 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction")
translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.593e-06/1.593e-06, allocations: 0 / 300.7 MB, free: 1.766 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.092e-05/1.251e-05, allocations: 2.312 kB / 300.7 MB, free: 1.762 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ExothermicReaction): time 0.006346/0.006358, allocations: 8.437 MB / 309.2 MB, free: 11.66 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01683/0.02319, allocations: 23.21 MB / 332.4 MB, free: 4.402 MB / 298.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0005965/0.02379, allocations: 27.75 kB / 332.4 MB, free: 4.375 MB / 298.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0008557/0.02464, allocations: 492 kB / 332.9 MB, free: 3.891 MB / 298.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003342/0.02798, allocations: 2.129 MB / 335 MB, free: 1.746 MB / 298.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.004972/0.03296, allocations: 3.184 MB / 338.2 MB, free: 14.54 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001797/0.03475, allocations: 2.585 MB / 340.8 MB, free: 11.94 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0009176/0.03567, allocations: 1.213 MB / 342 MB, free: 10.67 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001148/0.03682, allocations: 1.72 MB / 343.7 MB, free: 8.945 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0009151/0.03773, allocations: 1.126 MB / 344.8 MB, free: 7.816 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001849/0.03792, allocations: 216 kB / 345 MB, free: 7.605 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003139/0.04106, allocations: 2.491 MB / 347.5 MB, free: 5.109 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002962/0.04135, allocations: 0.5217 MB / 348 MB, free: 4.586 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0005157/0.04187, allocations: 0.799 MB / 348.8 MB, free: 3.785 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.003537/0.04541, allocations: 4.7 MB / 353.5 MB, free: 15.06 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.278e-06/0.04541, allocations: 8 kB / 353.6 MB, free: 15.05 MB / 330.7 MB
Notification: Performance of FrontEnd: time 9.32e-07/0.04541, allocations: 0 / 353.6 MB, free: 15.05 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 1.201e-05/0.04542, allocations: 0 / 353.6 MB, free: 15.05 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 455
 * Number of variables: 455
Notification: Performance of Generate backend data structure: time 0.002361/0.04778, allocations: 2.633 MB / 356.2 MB, free: 12.38 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.01e-05/0.04781, allocations: 12.02 kB / 356.2 MB, free: 12.37 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001001/0.04881, allocations: 0.6427 MB / 356.8 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007971/0.04961, allocations: 0.6998 MB / 357.5 MB, free: 11 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001261/0.04974, allocations: 247 kB / 357.8 MB, free: 10.73 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001819/0.04992, allocations: 180.3 kB / 358 MB, free: 10.55 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00133/0.05125, allocations: 1.552 MB / 359.5 MB, free: 8.965 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.532e-05/0.05127, allocations: 192 / 359.5 MB, free: 8.965 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001066/0.05138, allocations: 76.12 kB / 359.6 MB, free: 8.891 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.268e-05/0.0514, allocations: 47.94 kB / 359.6 MB, free: 8.844 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001313/0.05272, allocations: 1.297 MB / 360.9 MB, free: 7.543 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004747/0.05746, allocations: 4.197 MB / 365.1 MB, free: 3.246 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002182/0.05965, allocations: 1.989 MB / 367.1 MB, free: 1.234 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003672/0.06001, allocations: 399.5 kB / 367.5 MB, free: 0.8398 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004669/0.06468, allocations: 3.82 MB / 371.3 MB, free: 13 MB / 346.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.684e-05/0.06471, allocations: 47.56 kB / 371.4 MB, free: 12.94 MB / 346.7 MB
Notification: Performance of pre-optimization done (n=122): time 2.285e-06/0.06471, allocations: 0 / 371.4 MB, free: 12.94 MB / 346.7 MB
Notification: Performance of matching and sorting (n=150): time 0.01081/0.07552, allocations: 4.597 MB / 376 MB, free: 8.277 MB / 346.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.916e-05/0.07556, allocations: 102.3 kB / 376.1 MB, free: 8.16 MB / 346.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004522/0.07601, allocations: 0.7875 MB / 376.9 MB, free: 7.352 MB / 346.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.909e-05/0.07607, allocations: 49.7 kB / 376.9 MB, free: 7.297 MB / 346.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0005226/0.07659, allocations: 0.7786 MB / 377.7 MB, free: 6.508 MB / 346.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002509/0.07684, allocations: 0.5383 MB / 378.2 MB, free: 5.965 MB / 346.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002885/0.07713, allocations: 371.3 kB / 378.6 MB, free: 5.594 MB / 346.7 MB
Notification: Performance of setup shared object (initialization): time 9.319e-05/0.07722, allocations: 369.7 kB / 378.9 MB, free: 5.227 MB / 346.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002709/0.07749, allocations: 230.8 kB / 379.2 MB, free: 4.996 MB / 346.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005452/0.07804, allocations: 0.9581 MB / 380.1 MB, free: 3.699 MB / 346.7 MB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start (fixedTemperature.T = solution_at_constant_temperature.temperature_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.001043/0.07908, allocations: 1.464 MB / 381.6 MB, free: 1.902 MB / 346.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.694e-06/0.07909, allocations: 8 kB / 381.6 MB, free: 1.895 MB / 346.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.00276/0.08185, allocations: 1.669 MB / 383.3 MB, free: 208 kB / 346.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.276e-05/0.08187, allocations: 21.97 kB / 383.3 MB, free: 188 kB / 346.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.988e-05/0.08189, allocations: 24 kB / 383.3 MB, free: 164 kB / 346.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003541/0.08543, allocations: 1.069 MB / 384.4 MB, free: 15.08 MB / 362.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009276/0.08636, allocations: 0.511 MB / 384.9 MB, free: 14.57 MB / 362.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.004768/0.09113, allocations: 6.299 MB / 391.2 MB, free: 7.922 MB / 362.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005193/0.09165, allocations: 71.95 kB / 391.3 MB, free: 7.852 MB / 362.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001044/0.09175, allocations: 99.97 kB / 391.4 MB, free: 7.754 MB / 362.7 MB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 107
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (241):
 * Single equations (assignments): 237
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(3,6,77.8%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002995/0.09205, allocations: 255.8 kB / 391.6 MB, free: 7.492 MB / 362.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001604/0.09221, allocations: 123.9 kB / 391.7 MB, free: 7.371 MB / 362.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003181/0.0954, allocations: 1.818 MB / 393.6 MB, free: 5.5 MB / 362.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.226e-05/0.09541, allocations: 20.08 kB / 393.6 MB, free: 5.48 MB / 362.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.921e-06/0.09541, allocations: 4 kB / 393.6 MB, free: 5.477 MB / 362.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.082e-05/0.09542, allocations: 7.969 kB / 393.6 MB, free: 5.469 MB / 362.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002038/0.09746, allocations: 1.601 MB / 395.2 MB, free: 3.797 MB / 362.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.677e-06/0.09747, allocations: 0 / 395.2 MB, free: 3.797 MB / 362.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006532/0.09812, allocations: 311.9 kB / 395.5 MB, free: 3.492 MB / 362.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.003987/0.1021, allocations: 1.182 MB / 396.7 MB, free: 2.293 MB / 362.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.312e-05/0.1022, allocations: 39.98 kB / 396.7 MB, free: 2.254 MB / 362.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.005309/0.1075, allocations: 7.332 MB / 404 MB, free: 10.49 MB / 378.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.335e-06/0.1075, allocations: 4 kB / 404 MB, free: 10.49 MB / 378.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003115/0.1106, allocations: 1.818 MB / 405.9 MB, free: 8.609 MB / 378.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001444/0.1108, allocations: 111.1 kB / 406 MB, free: 8.5 MB / 378.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001066/0.1109, allocations: 31.94 kB / 406 MB, free: 8.469 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003366/0.1112, allocations: 35.98 kB / 406 MB, free: 8.434 MB / 378.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001897/0.1114, allocations: 133 kB / 406.2 MB, free: 8.305 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.073e-05/0.1115, allocations: 35.98 kB / 406.2 MB, free: 8.27 MB / 378.7 MB
Notification: Performance of sorting global known variables: time 0.0002883/0.1117, allocations: 371.9 kB / 406.6 MB, free: 7.895 MB / 378.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.1117, allocations: 0 / 406.6 MB, free: 7.895 MB / 378.7 MB
Notification: Performance of remove unused functions: time 0.00225/0.114, allocations: 1.06 MB / 407.6 MB, free: 6.832 MB / 378.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 12
 * Number of states: 7 (A1.logn,B1.logn,H2O.logn,A.logn,B.logn,H2O1.amountOfBonds,H2O1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (137):
 * Single equations (assignments): 132
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (2,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,1), (2,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001426/0.1154, allocations: 1.227 MB / 408.9 MB, free: 5.59 MB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.001783/0.1172, allocations: 1.535 MB / 410.4 MB, free: 4 MB / 378.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.938e-05/0.1172, allocations: 21.81 kB / 410.4 MB, free: 3.977 MB / 378.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0008248/0.1181, allocations: 1.102 MB / 411.5 MB, free: 2.805 MB / 378.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007824/0.1188, allocations: 334.5 kB / 411.8 MB, free: 2.492 MB / 378.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003167/0.122, allocations: 2.752 MB / 414.6 MB, free: 15.66 MB / 394.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002187/0.1222, allocations: 292.5 kB / 414.9 MB, free: 15.35 MB / 394.7 MB
Notification: Performance of simCode: alias equations: time 0.000634/0.1229, allocations: 309.9 kB / 415.2 MB, free: 15.05 MB / 394.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005708/0.1234, allocations: 437 kB / 415.6 MB, free: 14.62 MB / 394.7 MB
Notification: Performance of SimCode: time 7.91e-07/0.1234, allocations: 0 / 415.6 MB, free: 14.62 MB / 394.7 MB
Notification: Performance of Templates: time 0.1525/0.276, allocations: 42.93 MB / 458.5 MB, free: 126.8 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.sim & ./Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.032090170774609]