Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001323/0.001323, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00154/0.00154, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9116/0.9116, allocations: 177.1 MB / 203.8 MB, free: 5.461 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08351/0.08351, allocations: 17.47 MB / 277.7 MB, free: 11.43 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.272e-06/1.272e-06, allocations: 0 / 300.7 MB, free: 1.77 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.44e-05/1.567e-05, allocations: 3.188 kB / 300.7 MB, free: 1.766 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.03043/0.03045, allocations: 32.73 MB / 333.5 MB, free: 3.652 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005492/0.03594, allocations: 6.294 MB / 339.8 MB, free: 13.33 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002226/0.03616, allocations: 11.88 kB / 339.8 MB, free: 13.32 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0003861/0.03655, allocations: 150.8 kB / 339.9 MB, free: 13.17 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0005209/0.03707, allocations: 269.8 kB / 340.2 MB, free: 12.91 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001735/0.0388, allocations: 1.028 MB / 341.2 MB, free: 11.87 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005165/0.03932, allocations: 0.5291 MB / 341.7 MB, free: 11.34 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002426/0.03956, allocations: 173.1 kB / 341.9 MB, free: 11.16 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002599/0.03982, allocations: 323.4 kB / 342.2 MB, free: 10.85 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0004457/0.04027, allocations: 219.5 kB / 342.4 MB, free: 10.63 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.626e-05/0.04031, allocations: 28 kB / 342.5 MB, free: 10.61 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0007891/0.0411, allocations: 0.534 MB / 343 MB, free: 10.07 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 9.805e-05/0.0412, allocations: 99.66 kB / 343.1 MB, free: 9.973 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001124/0.04131, allocations: 139.7 kB / 343.2 MB, free: 9.836 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001074/0.04239, allocations: 1.035 MB / 344.3 MB, free: 8.797 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.256e-06/0.04239, allocations: 0 / 344.3 MB, free: 8.797 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.152e-06/0.04239, allocations: 3.938 kB / 344.3 MB, free: 8.793 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 5.35e-06/0.0424, allocations: 0 / 344.3 MB, free: 8.793 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0007537/0.04315, allocations: 0.6971 MB / 345 MB, free: 8.07 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.15e-05/0.04318, allocations: 8.031 kB / 345 MB, free: 8.062 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003744/0.04356, allocations: 180 kB / 345.1 MB, free: 7.887 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003429/0.0439, allocations: 305.5 kB / 345.4 MB, free: 7.562 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.537e-05/0.04392, allocations: 24.97 kB / 345.5 MB, free: 7.539 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.472e-05/0.04395, allocations: 24.38 kB / 345.5 MB, free: 7.516 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003018/0.04425, allocations: 358.8 kB / 345.8 MB, free: 7.129 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 9.908e-06/0.04426, allocations: 3.938 kB / 345.8 MB, free: 7.125 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.334e-05/0.04429, allocations: 12 kB / 345.9 MB, free: 7.113 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.352e-06/0.04429, allocations: 4 kB / 345.9 MB, free: 7.109 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003267/0.04462, allocations: 339.9 kB / 346.2 MB, free: 6.773 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001189/0.04581, allocations: 1.443 MB / 347.6 MB, free: 5.27 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001518/0.04596, allocations: 141.1 kB / 347.8 MB, free: 5.121 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 5.141e-05/0.04601, allocations: 36.84 kB / 347.8 MB, free: 5.082 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001012/0.04702, allocations: 0.9039 MB / 348.7 MB, free: 4.164 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.273e-05/0.04705, allocations: 34.55 kB / 348.7 MB, free: 4.121 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=9): time 9.61e-07/0.04705, allocations: 0 / 348.7 MB, free: 4.121 MB / 314.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0001717/0.04722, allocations: 137.8 kB / 348.9 MB, free: 3.98 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.77e-05/0.04725, allocations: 51.41 kB / 348.9 MB, free: 3.918 MB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002106/0.04746, allocations: 359 kB / 349.3 MB, free: 3.555 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.345e-05/0.04747, allocations: 29.7 kB / 349.3 MB, free: 3.52 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 9.887e-05/0.04757, allocations: 240.1 kB / 349.5 MB, free: 3.281 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003978/0.04797, allocations: 43.69 kB / 349.6 MB, free: 3.238 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.596e-05/0.04803, allocations: 73.61 kB / 349.7 MB, free: 3.16 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 8.918e-05/0.04812, allocations: 354.8 kB / 350 MB, free: 2.805 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.122e-05/0.04816, allocations: 34.81 kB / 350 MB, free: 2.77 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001308/0.04829, allocations: 250.1 kB / 350.3 MB, free: 2.418 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002103/0.0485, allocations: 322 kB / 350.6 MB, free: 1.992 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.247e-06/0.04851, allocations: 11.94 kB / 350.6 MB, free: 1.98 MB / 314.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0002434/0.04875, allocations: 265.7 kB / 350.9 MB, free: 1.711 MB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.436e-05/0.04877, allocations: 8 kB / 350.9 MB, free: 1.703 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.506e-06/0.04877, allocations: 8 kB / 350.9 MB, free: 1.695 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.472e-05/0.04879, allocations: 12.03 kB / 350.9 MB, free: 1.684 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001446/0.04893, allocations: 88.47 kB / 351 MB, free: 1.598 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.208e-06/0.04894, allocations: 15.92 kB / 351 MB, free: 1.582 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000119/0.04906, allocations: 43.73 kB / 351 MB, free: 1.539 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.641e-05/0.04909, allocations: 24 kB / 351.1 MB, free: 1.516 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 8.593e-05/0.04917, allocations: 144.4 kB / 351.2 MB, free: 1.363 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3e-05/0.0492, allocations: 19.97 kB / 351.2 MB, free: 1.344 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002606/0.04946, allocations: 222.1 kB / 351.4 MB, free: 1.098 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.543e-06/0.04947, allocations: 0 / 351.4 MB, free: 1.098 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.603e-06/0.04947, allocations: 0 / 351.4 MB, free: 1.098 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.274e-06/0.04947, allocations: 0 / 351.4 MB, free: 1.098 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002366/0.04971, allocations: 413.3 kB / 351.9 MB, free: 0.6641 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.493e-06/0.04971, allocations: 0 / 351.9 MB, free: 0.6641 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 8.316e-06/0.04972, allocations: 4 kB / 351.9 MB, free: 0.6602 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 3.417e-06/0.04972, allocations: 3.984 kB / 351.9 MB, free: 0.6562 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.677e-06/0.04972, allocations: 0 / 351.9 MB, free: 0.6562 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.353e-06/0.04972, allocations: 0 / 351.9 MB, free: 0.6562 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.423e-06/0.04973, allocations: 0 / 351.9 MB, free: 0.6562 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 5.513e-05/0.04978, allocations: 82.77 kB / 351.9 MB, free: 0.5547 MB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.719e-05/0.04981, allocations: 23.81 kB / 352 MB, free: 0.5312 MB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.509e-05/0.04983, allocations: 7.953 kB / 352 MB, free: 0.5234 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.661e-05/0.04987, allocations: 0 / 352 MB, free: 0.5234 MB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 8.847e-06/0.04988, allocations: 0 / 352 MB, free: 0.5234 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.547e-06/0.04988, allocations: 4 kB / 352 MB, free: 0.5195 MB / 314.7 MB
Notification: Performance of sorting global known variables: time 0.0001084/0.04999, allocations: 160.7 kB / 352.1 MB, free: 368 kB / 314.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.04999, allocations: 3.938 kB / 352.1 MB, free: 364 kB / 314.7 MB
Notification: Performance of remove unused functions: time 0.0003702/0.05036, allocations: 187.2 kB / 352.3 MB, free: 176 kB / 314.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003582/0.05072, allocations: 303.6 kB / 352.6 MB, free: 15.87 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0001438/0.05086, allocations: 114.4 kB / 352.7 MB, free: 15.75 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.206e-05/0.05088, allocations: 8 kB / 352.7 MB, free: 15.75 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 7.244e-06/0.05088, allocations: 8.844 kB / 352.7 MB, free: 15.73 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002462/0.05113, allocations: 77.3 kB / 352.8 MB, free: 15.66 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009192/0.05205, allocations: 0.5421 MB / 353.4 MB, free: 15.09 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.572e-05/0.05209, allocations: 96.61 kB / 353.5 MB, free: 14.98 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001644/0.05226, allocations: 75.05 kB / 353.5 MB, free: 14.9 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001411/0.0524, allocations: 123.3 kB / 353.6 MB, free: 14.78 MB / 330.7 MB
Notification: Performance of SimCode: time 1.152e-06/0.0524, allocations: 0 / 353.6 MB, free: 14.78 MB / 330.7 MB
Notification: Performance of Templates: time 0.008224/0.06062, allocations: 7.141 MB / 360.8 MB, free: 7.691 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.6210946277715266]