Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009526/0.0009526, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001112/0.001112, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9776/0.9776, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1397/0.1397, allocations: 17.47 MB / 277.7 MB, free: 11.44 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.443e-06/1.443e-06, allocations: 0 / 300.7 MB, free: 1.77 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.119e-05/2.263e-05, allocations: 6.312 kB / 300.7 MB, free: 1.762 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.04079/0.04081, allocations: 45.07 MB / 345.8 MB, free: 7.285 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02028/0.06109, allocations: 11.87 MB / 357.7 MB, free: 11.37 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003897/0.06498, allocations: 107.1 kB / 357.8 MB, free: 11.26 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.005403/0.07039, allocations: 2.198 MB / 360 MB, free: 9.051 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.006225/0.07661, allocations: 1.963 MB / 361.9 MB, free: 7.074 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.008158/0.08477, allocations: 4.555 MB / 366.5 MB, free: 2.5 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007495/0.09226, allocations: 4.794 MB / 371.3 MB, free: 13.69 MB / 346.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001413/0.09368, allocations: 0.8696 MB / 372.2 MB, free: 12.72 MB / 346.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.003858/0.09753, allocations: 2.631 MB / 374.8 MB, free: 10.08 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002991/0.1005, allocations: 2.053 MB / 376.8 MB, free: 8.023 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0008147/0.1013, allocations: 404 kB / 377.2 MB, free: 7.629 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004613/0.106, allocations: 2.117 MB / 379.3 MB, free: 5.508 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001099/0.1071, allocations: 1.382 MB / 380.7 MB, free: 4.121 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002289/0.1093, allocations: 1.5 MB / 382.2 MB, free: 2.621 MB / 346.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.008929/0.1183, allocations: 5.66 MB / 387.9 MB, free: 12.94 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.389e-06/0.1183, allocations: 3.984 kB / 387.9 MB, free: 12.94 MB / 362.7 MB
Notification: Performance of FrontEnd: time 2.314e-06/0.1183, allocations: 11.94 kB / 387.9 MB, free: 12.93 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 0.0001891/0.1185, allocations: 0 / 387.9 MB, free: 12.93 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.007117/0.1256, allocations: 5.184 MB / 393.1 MB, free: 7.684 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.338e-05/0.1256, allocations: 8.031 kB / 393.1 MB, free: 7.676 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002336/0.128, allocations: 1.996 MB / 395.1 MB, free: 5.68 MB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002177/0.1301, allocations: 1.689 MB / 396.8 MB, free: 3.895 MB / 362.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003511/0.1305, allocations: 0.6336 MB / 397.4 MB, free: 3.188 MB / 362.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003514/0.1308, allocations: 408.2 kB / 397.8 MB, free: 2.789 MB / 362.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.004784/0.1356, allocations: 4.943 MB / 402.8 MB, free: 13.81 MB / 378.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.356e-05/0.1357, allocations: 8.141 kB / 402.8 MB, free: 13.8 MB / 378.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001755/0.1358, allocations: 164.1 kB / 402.9 MB, free: 13.64 MB / 378.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003978/0.1362, allocations: 0.5871 MB / 403.5 MB, free: 13.05 MB / 378.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.005191/0.1414, allocations: 5.917 MB / 409.4 MB, free: 7.105 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01764/0.1591, allocations: 15.4 MB / 424.8 MB, free: 7.582 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001421/0.1605, allocations: 1.395 MB / 426.2 MB, free: 6.172 MB / 394.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000882/0.1614, allocations: 0.8611 MB / 427.1 MB, free: 5.309 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01139/0.1728, allocations: 9.353 MB / 436.4 MB, free: 11.93 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.421e-05/0.1728, allocations: 52.56 kB / 436.5 MB, free: 11.87 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.095e-06/0.1728, allocations: 0 / 436.5 MB, free: 11.87 MB / 410.7 MB
Notification: Performance of matching and sorting (n=324): time 0.1769/0.3497, allocations: 17.01 MB / 453.5 MB, free: 101.7 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.242e-05/0.3498, allocations: 76.58 kB / 453.6 MB, free: 101.6 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002093/0.3519, allocations: 1.843 MB / 455.4 MB, free: 101.4 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.000919/0.3528, allocations: 67.83 kB / 455.5 MB, free: 101.4 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001064/0.3539, allocations: 1.93 MB / 457.4 MB, free: 100.6 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001114/0.355, allocations: 1.12 MB / 458.5 MB, free: 100 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.00146/0.3564, allocations: 0.7877 MB / 459.3 MB, free: 99.99 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 3.282e-05/0.3565, allocations: 307.2 kB / 459.6 MB, free: 99.69 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001665/0.3581, allocations: 1.282 MB / 460.9 MB, free: 99.68 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001731/0.3599, allocations: 2.394 MB / 463.3 MB, free: 98.33 MB / 410.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.006066/0.3659, allocations: 6.245 MB / 469.5 MB, free: 96.8 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.0676916362717748]