Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009224/0.0009224, allocations: 80.81 kB / 19.94 MB, free: 4.539 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001048/0.001048, allocations: 177 kB / 23.36 MB, free: 1.125 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9929/0.9929, allocations: 177.1 MB / 203.8 MB, free: 5.492 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1022/0.1022, allocations: 17.46 MB / 277.7 MB, free: 11.44 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.633e-06/1.633e-06, allocations: 0 / 300.7 MB, free: 1.543 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.956e-05/2.119e-05, allocations: 3.734 kB / 300.7 MB, free: 1.539 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.04682/0.04685, allocations: 45.5 MB / 346.2 MB, free: 6.742 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01668/0.06352, allocations: 12.26 MB / 358.5 MB, free: 10.43 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003139/0.06666, allocations: 99.25 kB / 358.6 MB, free: 10.33 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0049/0.07156, allocations: 2.315 MB / 360.9 MB, free: 8.004 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00534/0.0769, allocations: 2.02 MB / 362.9 MB, free: 5.969 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.007137/0.08404, allocations: 4.598 MB / 367.5 MB, free: 1.352 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.006511/0.09055, allocations: 5.036 MB / 372.5 MB, free: 12.29 MB / 346.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001554/0.09211, allocations: 1.398 MB / 373.9 MB, free: 10.78 MB / 346.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00471/0.09682, allocations: 3.15 MB / 377.1 MB, free: 7.621 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.003153/0.09997, allocations: 2.358 MB / 379.4 MB, free: 5.258 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001086/0.1011, allocations: 0.5273 MB / 380 MB, free: 4.73 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004636/0.1057, allocations: 2.285 MB / 382.2 MB, free: 2.441 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001129/0.1068, allocations: 1.702 MB / 383.9 MB, free: 0.7344 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002299/0.1091, allocations: 1.781 MB / 385.7 MB, free: 14.95 MB / 362.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.008884/0.118, allocations: 6.634 MB / 392.4 MB, free: 8.293 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.318e-06/0.118, allocations: 0 / 392.4 MB, free: 8.293 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.453e-06/0.118, allocations: 0 / 392.4 MB, free: 8.293 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 0.0002751/0.1183, allocations: 0 / 392.4 MB, free: 8.293 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.007599/0.1259, allocations: 5.927 MB / 398.3 MB, free: 2.301 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.44e-05/0.1259, allocations: 8.031 kB / 398.3 MB, free: 2.293 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002672/0.1286, allocations: 2.093 MB / 400.4 MB, free: 204 kB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002144/0.1307, allocations: 1.752 MB / 402.1 MB, free: 14.38 MB / 378.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003439/0.1311, allocations: 0.7321 MB / 402.9 MB, free: 13.55 MB / 378.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003874/0.1315, allocations: 456.3 kB / 403.3 MB, free: 13.11 MB / 378.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00493/0.1364, allocations: 5.084 MB / 408.4 MB, free: 7.977 MB / 378.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.646e-05/0.1365, allocations: 192 / 408.4 MB, free: 7.977 MB / 378.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002228/0.1367, allocations: 184.1 kB / 408.6 MB, free: 7.797 MB / 378.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003751/0.137, allocations: 0.5527 MB / 409.1 MB, free: 7.242 MB / 378.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00466/0.1417, allocations: 5.137 MB / 414.3 MB, free: 2.09 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02094/0.1626, allocations: 16.52 MB / 430.8 MB, free: 1.461 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002071/0.1647, allocations: 1.54 MB / 432.3 MB, free: 15.91 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001024/0.1657, allocations: 0.9409 MB / 433.3 MB, free: 14.96 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01157/0.1773, allocations: 10.23 MB / 443.5 MB, free: 4.703 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.331e-05/0.1773, allocations: 52.56 kB / 443.6 MB, free: 4.645 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=289): time 3.567e-06/0.1774, allocations: 3.938 kB / 443.6 MB, free: 4.641 MB / 410.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 1.9922236180864275]