Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001367/0.001367, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001713/0.001713, allocations: 177 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9315/0.9315, allocations: 177.2 MB / 203.8 MB, free: 5.484 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08844/0.08844, allocations: 17.39 MB / 277.6 MB, free: 11.54 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.233e-06/1.233e-06, allocations: 0 / 300.6 MB, free: 1.918 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.123e-05/2.246e-05, allocations: 5.5 kB / 300.6 MB, free: 1.914 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.08137/0.08139, allocations: 84.35 MB / 385 MB, free: 116 kB / 346.7 MB
Notification: Performance of NFInst.instExpressions: time 0.2263/0.3077, allocations: 66.57 MB / 451.6 MB, free: 28.01 MB / 410.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01054/0.3182, allocations: 231.1 kB / 451.8 MB, free: 28.01 MB / 410.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.009232/0.3275, allocations: 2.766 MB / 454.5 MB, free: 28.01 MB / 410.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.02485/0.3523, allocations: 9.448 MB / 464 MB, free: 26.2 MB / 410.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.02762/0.3799, allocations: 14.9 MB / 478.9 MB, free: 24.71 MB / 410.7 MB
Notification: Performance of NFFlatten.flatten: time 0.06523/0.4452, allocations: 91.24 MB / 0.5568 GB, free: 7.324 MB / 458.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.06597/0.5111, allocations: 54.99 MB / 0.6105 GB, free: 3.266 MB / 0.4948 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.4727/0.9839, allocations: 75.03 MB / 0.6837 GB, free: 21.62 MB / 0.4949 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0859/1.07, allocations: 50.96 MB / 0.7335 GB, free: 10.87 MB / 0.5105 GB
Notification: Performance of NFPackage.collectConstants: time 0.04015/1.11, allocations: 12.2 MB / 0.7454 GB, free: 14.66 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.06003/1.17, allocations: 17.33 MB / 0.7624 GB, free: 13.93 MB / 0.5418 GB
Notification: Performance of NFScalarize.scalarize: time 0.04929/1.219, allocations: 24.28 MB / 0.7861 GB, free: 9.078 MB / 0.5574 GB
Notification: Performance of NFVerifyModel.verify: time 0.07522/1.294, allocations: 31.12 MB / 0.8165 GB, free: 13.4 MB / 0.5887 GB
Notification: Performance of NFConvertDAE.convert: time 0.5865/1.881, allocations: 86.99 MB / 0.9014 GB, free: 63.08 MB / 0.5888 GB
Notification: Performance of FrontEnd - DAE generated: time 6.953e-06/1.881, allocations: 0 / 0.9014 GB, free: 63.08 MB / 0.5888 GB
Notification: Performance of FrontEnd: time 1.362e-06/1.881, allocations: 0 / 0.9014 GB, free: 63.08 MB / 0.5888 GB
Notification: Performance of Transformations before backend: time 0.003401/1.884, allocations: 2.844 kB / 0.9014 GB, free: 63.08 MB / 0.5888 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.1603/2.045, allocations: 57.97 MB / 0.958 GB, free: 44.82 MB / 0.5888 GB
Notification: Performance of prepare preOptimizeDAE: time 4.451e-05/2.045, allocations: 8.25 kB / 0.958 GB, free: 44.82 MB / 0.5888 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.06926/2.114, allocations: 18.79 MB / 0.9764 GB, free: 34.02 MB / 0.5888 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.05656/2.171, allocations: 20.24 MB / 0.9961 GB, free: 17.7 MB / 0.5888 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005027/2.176, allocations: 9.188 MB / 1.005 GB, free: 8.711 MB / 0.5888 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.02802/2.204, allocations: 4.568 MB / 1.01 GB, free: 5.66 MB / 0.5888 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.3834/2.587, allocations: 52.66 MB / 1.061 GB, free: 154.7 MB / 0.62 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002626/2.59, allocations: 25.56 kB / 1.061 GB, free: 154.7 MB / 0.62 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.02686/2.616, allocations: 1.765 MB / 1.063 GB, free: 154.7 MB / 0.62 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001119/2.618, allocations: 1.056 MB / 1.064 GB, free: 154.7 MB / 0.62 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.131/2.749, allocations: 45.82 MB / 1.109 GB, free: 153.6 MB / 0.62 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.4754/3.224, allocations: 173.7 MB / 1.278 GB, free: 12.64 MB / 0.62 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.174/5.398, allocations: 0.8793 GB / 2.157 GB, free: 9.668 MB / 0.62 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.2627/5.66, allocations: 16.33 MB / 2.173 GB, free: 141.2 MB / 0.62 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.2339/5.894, allocations: 91.23 MB / 2.262 GB, free: 128.1 MB / 0.62 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001931/5.895, allocations: 339.3 kB / 2.263 GB, free: 127.9 MB / 0.62 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0516/5.946, allocations: 26.8 MB / 2.289 GB, free: 112.5 MB / 0.62 GB
Notification: Performance of pre-optimization done (n=2949): time 0.0001353/5.946, allocations: 2.625 kB / 2.289 GB, free: 112.5 MB / 0.62 GB
Notification: Performance of matching and sorting (n=3351): time 1.1/7.047, allocations: 181.3 MB / 2.466 GB, free: 104.6 MB / 0.62 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001939/7.047, allocations: 447.2 kB / 2.466 GB, free: 104.4 MB / 0.62 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.03274/7.08, allocations: 22.59 MB / 2.489 GB, free: 100 MB / 0.62 GB
Notification: Performance of collectPreVariables (initialization): time 0.01215/7.092, allocations: 0.564 MB / 2.489 GB, free: 99.99 MB / 0.62 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01054/7.102, allocations: 17.03 MB / 2.506 GB, free: 91.09 MB / 0.62 GB
Notification: Performance of collectInitialBindings (initialization): time 0.01967/7.122, allocations: 12.12 MB / 2.518 GB, free: 82.29 MB / 0.62 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.04174/7.164, allocations: 8.461 MB / 2.526 GB, free: 80.09 MB / 0.62 GB
Notification: Performance of setup shared object (initialization): time 3.105e-05/7.164, allocations: 301.1 kB / 2.526 GB, free: 79.79 MB / 0.62 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0254/7.189, allocations: 8.855 MB / 2.535 GB, free: 78.56 MB / 0.62 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.03211/7.221, allocations: 21.54 MB / 2.556 GB, free: 60.88 MB / 0.62 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.05269/7.274, allocations: 36.33 MB / 2.591 GB, free: 23.61 MB / 0.62 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005214/7.274, allocations: 124 kB / 2.591 GB, free: 23.49 MB / 0.62 GB
Notification: Performance of matching and sorting (n=5583) (initialization): time 0.8404/8.115, allocations: 111 MB / 2.7 GB, free: 83.71 MB / 0.62 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0003282/8.115, allocations: 199.6 kB / 2.7 GB, free: 83.7 MB / 0.62 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0005982/8.116, allocations: 440.3 kB / 2.7 GB, free: 83.7 MB / 0.62 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.5588/8.675, allocations: 154.5 MB / 2.851 GB, free: 137.6 MB / 0.6513 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03378/8.708, allocations: 10.4 MB / 2.861 GB, free: 137.6 MB / 0.6513 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.1832/8.892, allocations: 60.21 MB / 2.92 GB, free: 121.1 MB / 0.6513 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.03931/8.931, allocations: 1.386 MB / 2.922 GB, free: 120.4 MB / 0.6513 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01466/8.946, allocations: 2.125 MB / 2.924 GB, free: 120 MB / 0.6513 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1983
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5439):
 * Single equations (assignments): 5430
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.03542/8.981, allocations: 2.856 MB / 2.926 GB, free: 118.7 MB / 0.6513 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02381/9.005, allocations: 2.753 MB / 2.929 GB, free: 118.3 MB / 0.6513 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.3695/9.374, allocations: 72.57 MB / 3 GB, free: 64.38 MB / 0.6513 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0004268/9.375, allocations: 360 kB / 3 GB, free: 64.03 MB / 0.6513 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004206/9.375, allocations: 56 kB / 3 GB, free: 63.97 MB / 0.6513 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0009751/9.376, allocations: 175.3 kB / 3.001 GB, free: 63.8 MB / 0.6513 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.702/10.08, allocations: 103.2 MB / 3.101 GB, free: 99.64 MB / 0.6513 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.000225/10.08, allocations: 9.188 kB / 3.101 GB, free: 99.64 MB / 0.6513 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02655/10.1, allocations: 6.656 MB / 3.108 GB, free: 99.64 MB / 0.6513 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1312/10.24, allocations: 51.25 MB / 3.158 GB, free: 97.04 MB / 0.6513 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01051/10.25, allocations: 1.253 MB / 3.159 GB, free: 97.04 MB / 0.6513 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1122/10.36, allocations: 36.04 MB / 3.194 GB, free: 79.45 MB / 0.6513 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.003e-06/10.36, allocations: 15.78 kB / 3.194 GB, free: 79.45 MB / 0.6513 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.3888/10.75, allocations: 85.2 MB / 3.278 GB, free: 13.33 MB / 0.6513 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.02267/10.77, allocations: 4.22 MB / 3.282 GB, free: 11.17 MB / 0.6513 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01425/10.78, allocations: 0.8934 MB / 3.282 GB, free: 10.3 MB / 0.6513 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.02589/10.81, allocations: 0.7576 MB / 3.283 GB, free: 9.543 MB / 0.6513 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01573/10.83, allocations: 3.631 MB / 3.287 GB, free: 5.906 MB / 0.6513 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01079/10.84, allocations: 0.9754 MB / 3.288 GB, free: 4.93 MB / 0.6513 GB
Notification: Performance of sorting global known variables: time 0.3103/11.15, allocations: 11.33 MB / 3.299 GB, free: 115.7 MB / 0.6513 GB
Notification: Performance of sort global known variables: time 2.41e-07/11.15, allocations: 1.875 kB / 3.299 GB, free: 115.7 MB / 0.6513 GB
Notification: Performance of remove unused functions: time 0.07508/11.22, allocations: 15.4 MB / 3.314 GB, free: 115.7 MB / 0.6513 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3666):
 * Single equations (assignments): 3657
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.01665/11.24, allocations: 3.536 MB / 3.317 GB, free: 115.6 MB / 0.6513 GB
Notification: Performance of simCode: created initialization part: time 0.1016/11.34, allocations: 30.36 MB / 3.347 GB, free: 113.3 MB / 0.6513 GB
Notification: Performance of simCode: created event and clocks part: time 0.001603/11.34, allocations: 382.7 kB / 3.347 GB, free: 113.2 MB / 0.6513 GB
Notification: Performance of simCode: created simulation system equations: time 0.0598/11.4, allocations: 16.38 MB / 3.363 GB, free: 111.6 MB / 0.6513 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.04911/11.45, allocations: 8.025 MB / 3.371 GB, free: 110.9 MB / 0.6513 GB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.2003/11.65, allocations: 87.47 MB / 3.457 GB, free: 45.22 MB / 0.6513 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0325/11.68, allocations: 10.48 MB / 3.467 GB, free: 38.03 MB / 0.6513 GB
Notification: Performance of simCode: alias equations: time 0.03439/11.72, allocations: 5.15 MB / 3.472 GB, free: 34.38 MB / 0.6513 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.04572/11.76, allocations: 7.837 MB / 3.479 GB, free: 28.17 MB / 0.6513 GB
Notification: Performance of SimCode: time 2.355e-06/11.76, allocations: 0 / 3.479 GB, free: 28.17 MB / 0.6513 GB
Notification: Performance of Templates: time 2.312/14.08, allocations: 0.9684 GB / 4.448 GB, free: 136.8 MB / 0.6669 GB
"
[Timeout remaining time 646]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 35.29667351115495]