Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001113/0.001113, allocations: 80.88 kB / 19.94 MB, free: 4.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001146/0.001146, allocations: 177 kB / 23.36 MB, free: 1.137 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9219/0.9219, allocations: 177.1 MB / 203.8 MB, free: 5.469 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1144/0.1144, allocations: 17.39 MB / 277.6 MB, free: 11.52 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.EnzymeKinetics")
translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.EnzymeKinetics") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.142e-06/1.142e-06, allocations: 0 / 300.6 MB, free: 1.648 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.695e-05/1.809e-05, allocations: 4.781 kB / 300.6 MB, free: 1.645 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.EnzymeKinetics): time 0.03396/0.03398, allocations: 36.36 MB / 337 MB, free: 132 kB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01475/0.04873, allocations: 19.41 MB / 356.4 MB, free: 12.64 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0009507/0.04968, allocations: 23.81 kB / 356.4 MB, free: 12.62 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0008576/0.05054, allocations: 392.8 kB / 356.8 MB, free: 12.23 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003647/0.05418, allocations: 1.749 MB / 358.5 MB, free: 10.47 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005071/0.05925, allocations: 2.628 MB / 361.2 MB, free: 7.824 MB / 330.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001972/0.06122, allocations: 2.039 MB / 363.2 MB, free: 5.777 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001053/0.06228, allocations: 0.971 MB / 364.2 MB, free: 4.773 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00141/0.06369, allocations: 1.384 MB / 365.6 MB, free: 3.387 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001158/0.06485, allocations: 0.9354 MB / 366.5 MB, free: 2.449 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003108/0.06516, allocations: 172 kB / 366.7 MB, free: 2.281 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004291/0.06945, allocations: 2.066 MB / 368.7 MB, free: 216 kB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003768/0.06982, allocations: 438.6 kB / 369.2 MB, free: 15.78 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0006377/0.07046, allocations: 0.6354 MB / 369.8 MB, free: 15.14 MB / 346.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.006425/0.07689, allocations: 3.903 MB / 373.7 MB, free: 11.23 MB / 346.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.17e-06/0.07689, allocations: 0 / 373.7 MB, free: 11.23 MB / 346.7 MB
Notification: Performance of FrontEnd: time 1.102e-06/0.07689, allocations: 0 / 373.7 MB, free: 11.23 MB / 346.7 MB
Notification: Performance of Transformations before backend: time 3.702e-05/0.07693, allocations: 0 / 373.7 MB, free: 11.23 MB / 346.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 337
 * Number of variables: 337
Notification: Performance of Generate backend data structure: time 0.00276/0.07969, allocations: 2.126 MB / 375.8 MB, free: 9.066 MB / 346.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.508e-05/0.07972, allocations: 8.031 kB / 375.8 MB, free: 9.059 MB / 346.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0009887/0.08071, allocations: 0.5143 MB / 376.3 MB, free: 8.543 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008003/0.08151, allocations: 0.598 MB / 376.9 MB, free: 7.918 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001205/0.08163, allocations: 214 kB / 377.1 MB, free: 7.684 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001554/0.08179, allocations: 140.3 kB / 377.3 MB, free: 7.547 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001223/0.08301, allocations: 1.252 MB / 378.5 MB, free: 6.25 MB / 346.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.37e-05/0.08304, allocations: 4.125 kB / 378.5 MB, free: 6.246 MB / 346.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.736e-05/0.08312, allocations: 52.12 kB / 378.6 MB, free: 6.195 MB / 346.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.058e-05/0.08314, allocations: 32 kB / 378.6 MB, free: 6.164 MB / 346.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00125/0.08439, allocations: 1.078 MB / 379.7 MB, free: 5.07 MB / 346.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004193/0.08859, allocations: 3.258 MB / 383 MB, free: 1.754 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002778/0.09137, allocations: 2.851 MB / 385.8 MB, free: 14.88 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003664/0.09173, allocations: 364.5 kB / 386.2 MB, free: 14.52 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.00425/0.09598, allocations: 3.2 MB / 389.4 MB, free: 11.3 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.883e-05/0.09601, allocations: 43.56 kB / 389.4 MB, free: 11.25 MB / 362.7 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0002816/0.09629, allocations: 131.2 kB / 389.5 MB, free: 11.12 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=97): time 2.385e-06/0.09629, allocations: 0 / 389.5 MB, free: 11.12 MB / 362.7 MB
Notification: Performance of matching and sorting (n=116): time 0.00697/0.1033, allocations: 3.083 MB / 392.6 MB, free: 7.996 MB / 362.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.33e-05/0.1033, allocations: 72.34 kB / 392.7 MB, free: 7.914 MB / 362.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004099/0.1037, allocations: 0.6476 MB / 393.3 MB, free: 7.254 MB / 362.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.32e-05/0.1038, allocations: 45.7 kB / 393.4 MB, free: 7.203 MB / 362.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002322/0.104, allocations: 0.5985 MB / 394 MB, free: 6.598 MB / 362.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002168/0.1042, allocations: 428.3 kB / 394.4 MB, free: 6.176 MB / 362.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002448/0.1045, allocations: 295.3 kB / 394.7 MB, free: 5.879 MB / 362.7 MB
Notification: Performance of setup shared object (initialization): time 9.402e-05/0.1045, allocations: 361.8 kB / 395 MB, free: 5.52 MB / 362.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002504/0.1048, allocations: 194.7 kB / 395.2 MB, free: 5.328 MB / 362.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000417/0.1052, allocations: 0.7028 MB / 395.9 MB, free: 4.406 MB / 362.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0008267/0.106, allocations: 1.084 MB / 397 MB, free: 3.09 MB / 362.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.793e-06/0.106, allocations: 4 kB / 397 MB, free: 3.086 MB / 362.7 MB
Notification: Performance of matching and sorting (n=197) (initialization): time 0.001992/0.108, allocations: 1.187 MB / 398.2 MB, free: 1.879 MB / 362.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.149e-05/0.1081, allocations: 12 kB / 398.2 MB, free: 1.867 MB / 362.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.547e-05/0.1081, allocations: 20 kB / 398.2 MB, free: 1.848 MB / 362.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.001427/0.1095, allocations: 450.6 kB / 398.7 MB, free: 1.398 MB / 362.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006232/0.1101, allocations: 367.4 kB / 399 MB, free: 1.039 MB / 362.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.002403/0.1125, allocations: 3.004 MB / 402 MB, free: 13.86 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004942/0.113, allocations: 48 kB / 402.1 MB, free: 13.81 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.358e-05/0.1131, allocations: 79.97 kB / 402.2 MB, free: 13.73 MB / 378.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 75
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (190):
 * Single equations (assignments): 187
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002647/0.1134, allocations: 216.1 kB / 402.4 MB, free: 13.51 MB / 378.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000127/0.1135, allocations: 99.84 kB / 402.5 MB, free: 13.41 MB / 378.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002055/0.1156, allocations: 1.102 MB / 403.6 MB, free: 12.29 MB / 378.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.734e-06/0.1156, allocations: 12 kB / 403.6 MB, free: 12.28 MB / 378.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.807e-06/0.1156, allocations: 4 kB / 403.6 MB, free: 12.28 MB / 378.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.084e-05/0.1156, allocations: 7.969 kB / 403.6 MB, free: 12.27 MB / 378.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0009265/0.1165, allocations: 0.8248 MB / 404.4 MB, free: 11.4 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.712e-06/0.1165, allocations: 4.125 kB / 404.4 MB, free: 11.4 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004657/0.117, allocations: 223.7 kB / 404.6 MB, free: 11.18 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.001414/0.1184, allocations: 430 kB / 405.1 MB, free: 10.75 MB / 378.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.319e-05/0.1185, allocations: 39.97 kB / 405.1 MB, free: 10.71 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.002114/0.1206, allocations: 2.905 MB / 408 MB, free: 7.633 MB / 378.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.335e-06/0.1206, allocations: 4 kB / 408 MB, free: 7.629 MB / 378.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002128/0.1227, allocations: 1.293 MB / 409.3 MB, free: 6.301 MB / 378.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002684/0.123, allocations: 139.2 kB / 409.4 MB, free: 6.164 MB / 378.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.766e-05/0.1231, allocations: 27.94 kB / 409.5 MB, free: 6.137 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000279/0.1233, allocations: 27.98 kB / 409.5 MB, free: 6.109 MB / 378.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001601/0.1235, allocations: 108.8 kB / 409.6 MB, free: 6.004 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.714e-05/0.1236, allocations: 52.03 kB / 409.7 MB, free: 5.953 MB / 378.7 MB
Notification: Performance of sorting global known variables: time 0.0002016/0.1238, allocations: 276.5 kB / 409.9 MB, free: 5.68 MB / 378.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.1238, allocations: 3.938 kB / 409.9 MB, free: 5.676 MB / 378.7 MB
Notification: Performance of remove unused functions: time 0.001714/0.1255, allocations: 0.8415 MB / 410.8 MB, free: 4.832 MB / 378.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 6 (solution.temperature,P.logn,S.logn,ES.logn,E.logn,liquidWater.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (120):
 * Single equations (assignments): 117
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001204/0.1267, allocations: 1.021 MB / 411.8 MB, free: 3.801 MB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.001145/0.1278, allocations: 1.053 MB / 412.8 MB, free: 2.719 MB / 378.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.362e-05/0.1278, allocations: 13.81 kB / 412.9 MB, free: 2.707 MB / 378.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0005524/0.1284, allocations: 0.6356 MB / 413.5 MB, free: 2.039 MB / 378.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0005854/0.129, allocations: 271 kB / 413.8 MB, free: 1.777 MB / 378.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002761/0.1317, allocations: 2.161 MB / 415.9 MB, free: 15.56 MB / 394.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001547/0.1319, allocations: 230.5 kB / 416.1 MB, free: 15.31 MB / 394.7 MB
Notification: Performance of simCode: alias equations: time 0.0005957/0.1325, allocations: 280.6 kB / 416.4 MB, free: 15.03 MB / 394.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005247/0.133, allocations: 373.1 kB / 416.8 MB, free: 14.66 MB / 394.7 MB
Notification: Performance of SimCode: time 6.01e-07/0.133, allocations: 4 kB / 416.8 MB, free: 14.66 MB / 394.7 MB
Notification: Performance of Templates: time 0.1403/0.2733, allocations: 32.85 MB / 449.6 MB, free: 109.5 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.sim & ./Chemical_Chemical.Obsolete.Examples.EnzymeKinetics -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.74544078996405]