Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008267/0.0008267, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008393/0.0008393, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8877/0.8877, allocations: 177.1 MB / 203.8 MB, free: 5.461 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08805/0.08805, allocations: 17.38 MB / 277.6 MB, free: 11.51 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.523e-06/1.523e-06, allocations: 1.375 kB / 300.6 MB, free: 1.863 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.887e-05/2.039e-05, allocations: 6.406 kB / 300.6 MB, free: 1.859 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.03183/0.03185, allocations: 32.71 MB / 333.3 MB, free: 3.902 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.00551/0.03736, allocations: 6.29 MB / 339.6 MB, free: 13.59 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002855/0.03765, allocations: 11.88 kB / 339.6 MB, free: 13.58 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004016/0.03805, allocations: 150.8 kB / 339.8 MB, free: 13.43 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0005599/0.03861, allocations: 273.8 kB / 340.1 MB, free: 13.16 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001857/0.04047, allocations: 1.024 MB / 341.1 MB, free: 12.13 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005331/0.041, allocations: 0.5213 MB / 341.6 MB, free: 11.61 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002481/0.04125, allocations: 177.1 kB / 341.8 MB, free: 11.43 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002705/0.04152, allocations: 323.4 kB / 342.1 MB, free: 11.11 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.000281/0.0418, allocations: 223.5 kB / 342.3 MB, free: 10.89 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.684e-05/0.04185, allocations: 28 kB / 342.3 MB, free: 10.86 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0008991/0.04275, allocations: 0.5301 MB / 342.9 MB, free: 10.33 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001047/0.04285, allocations: 95.59 kB / 343 MB, free: 10.24 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001173/0.04297, allocations: 143.7 kB / 343.1 MB, free: 10.1 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001191/0.04416, allocations: 1.043 MB / 344.1 MB, free: 9.051 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.789e-06/0.04416, allocations: 0 / 344.1 MB, free: 9.051 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.312e-06/0.04416, allocations: 0 / 344.1 MB, free: 9.051 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 5.31e-06/0.04417, allocations: 0 / 344.1 MB, free: 9.051 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0007291/0.0449, allocations: 0.6974 MB / 344.8 MB, free: 8.328 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.2e-05/0.04493, allocations: 12.03 kB / 344.8 MB, free: 8.316 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003493/0.04528, allocations: 171.9 kB / 345 MB, free: 8.148 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003496/0.04563, allocations: 309.6 kB / 345.3 MB, free: 7.82 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.649e-05/0.04565, allocations: 21.03 kB / 345.3 MB, free: 7.801 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.469e-05/0.04568, allocations: 24.38 kB / 345.4 MB, free: 7.777 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002962/0.04598, allocations: 350.8 kB / 345.7 MB, free: 7.398 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.184e-05/0.04599, allocations: 15.88 kB / 345.7 MB, free: 7.383 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.489e-05/0.04601, allocations: 12 kB / 345.7 MB, free: 7.371 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.183e-06/0.04602, allocations: 8 kB / 345.7 MB, free: 7.363 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003226/0.04634, allocations: 339.9 kB / 346.1 MB, free: 7.027 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001153/0.0475, allocations: 1.443 MB / 347.5 MB, free: 5.523 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001414/0.04764, allocations: 133.2 kB / 347.6 MB, free: 5.383 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 5.079e-05/0.04769, allocations: 40.84 kB / 347.7 MB, free: 5.34 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.000989/0.04868, allocations: 0.8999 MB / 348.6 MB, free: 4.426 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.959e-05/0.0487, allocations: 38.55 kB / 348.6 MB, free: 4.379 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.262e-06/0.0487, allocations: 0 / 348.6 MB, free: 4.379 MB / 314.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0001688/0.04887, allocations: 137.5 kB / 348.8 MB, free: 4.238 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.168e-05/0.0489, allocations: 51.41 kB / 348.8 MB, free: 4.176 MB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001966/0.0491, allocations: 363 kB / 349.2 MB, free: 3.809 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.169e-05/0.04911, allocations: 25.7 kB / 349.2 MB, free: 3.777 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 9.967e-05/0.04921, allocations: 240.2 kB / 349.4 MB, free: 3.539 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.02e-05/0.04923, allocations: 35.69 kB / 349.5 MB, free: 3.504 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.693e-05/0.04929, allocations: 81.61 kB / 349.5 MB, free: 3.418 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 8.646e-05/0.04938, allocations: 354.9 kB / 349.9 MB, free: 3.062 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.483e-05/0.04943, allocations: 30.81 kB / 349.9 MB, free: 3.031 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001245/0.04955, allocations: 250.1 kB / 350.2 MB, free: 2.68 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002131/0.04976, allocations: 330 kB / 350.5 MB, free: 2.246 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.988e-06/0.04977, allocations: 4 kB / 350.5 MB, free: 2.242 MB / 314.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0002401/0.05001, allocations: 265.8 kB / 350.7 MB, free: 1.973 MB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.776e-05/0.05003, allocations: 10.19 kB / 350.8 MB, free: 1.965 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.388e-06/0.05003, allocations: 11.94 kB / 350.8 MB, free: 1.953 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.867e-05/0.05005, allocations: 12 kB / 350.8 MB, free: 1.941 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001376/0.05019, allocations: 79.91 kB / 350.9 MB, free: 1.863 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.458e-06/0.0502, allocations: 24.42 kB / 350.9 MB, free: 1.84 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001133/0.05031, allocations: 39.73 kB / 350.9 MB, free: 1.801 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.467e-05/0.05034, allocations: 20 kB / 350.9 MB, free: 1.781 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 8.927e-05/0.05043, allocations: 148.4 kB / 351.1 MB, free: 1.625 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.064e-05/0.05046, allocations: 19.97 kB / 351.1 MB, free: 1.605 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000255/0.05071, allocations: 218 kB / 351.3 MB, free: 1.363 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.704e-06/0.05072, allocations: 4.031 kB / 351.3 MB, free: 1.359 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.383e-06/0.05072, allocations: 4 kB / 351.3 MB, free: 1.355 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.415e-06/0.05072, allocations: 0 / 351.3 MB, free: 1.355 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002341/0.05095, allocations: 409.3 kB / 351.7 MB, free: 0.9258 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.623e-06/0.05095, allocations: 0 / 351.7 MB, free: 0.9258 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 6.011e-06/0.05096, allocations: 0 / 351.7 MB, free: 0.9258 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.715e-06/0.05096, allocations: 3.984 kB / 351.7 MB, free: 0.9219 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.818e-06/0.05097, allocations: 0 / 351.7 MB, free: 0.9219 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.923e-06/0.05097, allocations: 0 / 351.7 MB, free: 0.9219 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.81e-07/0.05097, allocations: 4 kB / 351.7 MB, free: 0.918 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 5.977e-05/0.05103, allocations: 90.67 kB / 351.8 MB, free: 0.8086 MB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.663e-05/0.05106, allocations: 23.81 kB / 351.8 MB, free: 0.7852 MB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.631e-05/0.05108, allocations: 7.953 kB / 351.8 MB, free: 0.7773 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.516e-05/0.05112, allocations: 0 / 351.8 MB, free: 0.7773 MB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.257e-06/0.05113, allocations: 0 / 351.8 MB, free: 0.7773 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.606e-06/0.05113, allocations: 4 kB / 351.9 MB, free: 0.7734 MB / 314.7 MB
Notification: Performance of sorting global known variables: time 0.0001076/0.05124, allocations: 156.7 kB / 352 MB, free: 0.6172 MB / 314.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.05124, allocations: 0 / 352 MB, free: 0.6172 MB / 314.7 MB
Notification: Performance of remove unused functions: time 0.0003634/0.0516, allocations: 183.3 kB / 352.2 MB, free: 448 kB / 314.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003772/0.05198, allocations: 315.6 kB / 352.5 MB, free: 124 kB / 314.7 MB
Notification: Performance of simCode: created initialization part: time 0.0001574/0.05214, allocations: 118.6 kB / 352.6 MB, free: 4 kB / 314.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.16e-05/0.05215, allocations: 4 kB / 352.6 MB, free: 0 / 314.7 MB
Notification: Performance of simCode: created simulation system equations: time 2.076e-05/0.05217, allocations: 8.844 kB / 352.6 MB, free: 15.99 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002393/0.05241, allocations: 88.98 kB / 352.7 MB, free: 15.91 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009054/0.05331, allocations: 0.542 MB / 353.2 MB, free: 15.33 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.59e-05/0.05336, allocations: 92.61 kB / 353.3 MB, free: 15.22 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001584/0.05352, allocations: 82.42 kB / 353.4 MB, free: 15.14 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001327/0.05365, allocations: 119.3 kB / 353.5 MB, free: 15.03 MB / 330.7 MB
Notification: Performance of SimCode: time 8.12e-07/0.05365, allocations: 0 / 353.5 MB, free: 15.03 MB / 330.7 MB
Notification: Performance of Templates: time 0.008155/0.06181, allocations: 7.141 MB / 360.7 MB, free: 7.938 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.7010238240472972]