Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001265/0.001265, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001348/0.001348, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9766/0.9766, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.06548/0.06548, allocations: 12.75 MB / 273 MB, free: 168 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.223e-06/1.223e-06, allocations: 0 / 293.9 MB, free: 12.02 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.796e-05/1.919e-05, allocations: 2.312 kB / 293.9 MB, free: 12.02 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC): time 0.007333/0.007352, allocations: 10.41 MB / 304.3 MB, free: 4.941 MB / 266.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01198/0.01934, allocations: 11.33 MB / 315.7 MB, free: 11.39 MB / 282.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0007888/0.02012, allocations: 102.9 kB / 315.8 MB, free: 11.29 MB / 282.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0005287/0.02065, allocations: 404 kB / 316.2 MB, free: 10.89 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.00386/0.02451, allocations: 2.226 MB / 318.4 MB, free: 8.652 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.003145/0.02766, allocations: 2.01 MB / 320.4 MB, free: 6.648 MB / 282.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0024/0.03006, allocations: 2.877 MB / 323.3 MB, free: 3.758 MB / 282.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0005651/0.03062, allocations: 404.6 kB / 323.7 MB, free: 3.324 MB / 282.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001457/0.03208, allocations: 1.372 MB / 325 MB, free: 1.949 MB / 282.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001314/0.03339, allocations: 1.219 MB / 326.3 MB, free: 0.7266 MB / 282.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002417/0.03364, allocations: 148 kB / 326.4 MB, free: 0.582 MB / 282.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0002687/0.0339, allocations: 159.9 kB / 326.6 MB, free: 436 kB / 282.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003542/0.03426, allocations: 0.5487 MB / 327.1 MB, free: 15.88 MB / 298.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.000534/0.03479, allocations: 0.7051 MB / 327.8 MB, free: 15.17 MB / 298.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001245/0.03604, allocations: 1.879 MB / 329.7 MB, free: 13.28 MB / 298.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.887e-06/0.03604, allocations: 0 / 329.7 MB, free: 13.28 MB / 298.7 MB
Notification: Performance of FrontEnd: time 1.613e-06/0.03604, allocations: 0 / 329.7 MB, free: 13.28 MB / 298.7 MB
Notification: Performance of Transformations before backend: time 1.973e-05/0.03606, allocations: 0 / 329.7 MB, free: 13.28 MB / 298.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 287
 * Number of variables: 287
Notification: Performance of Generate backend data structure: time 0.002444/0.03851, allocations: 2.454 MB / 332.1 MB, free: 10.79 MB / 298.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.759e-05/0.03854, allocations: 11.98 kB / 332.2 MB, free: 10.78 MB / 298.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006585/0.0392, allocations: 324.7 kB / 332.5 MB, free: 10.46 MB / 298.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001262/0.04047, allocations: 1.192 MB / 333.7 MB, free: 9.227 MB / 298.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.827e-05/0.04051, allocations: 86.64 kB / 333.7 MB, free: 9.141 MB / 298.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001105/0.04062, allocations: 116.4 kB / 333.9 MB, free: 9.027 MB / 298.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007857/0.04141, allocations: 0.8107 MB / 334.7 MB, free: 8.172 MB / 298.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.09e-05/0.04143, allocations: 3.938 kB / 334.7 MB, free: 8.168 MB / 298.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.177e-05/0.04149, allocations: 48 kB / 334.7 MB, free: 8.121 MB / 298.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.56e-05/0.04151, allocations: 24 kB / 334.7 MB, free: 8.098 MB / 298.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004842/0.04199, allocations: 366.5 kB / 335.1 MB, free: 7.727 MB / 298.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003798/0.04579, allocations: 2.517 MB / 337.6 MB, free: 5.152 MB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0005858/0.04638, allocations: 438.6 kB / 338 MB, free: 4.699 MB / 298.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.00028/0.04666, allocations: 187.6 kB / 338.2 MB, free: 4.512 MB / 298.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 5.501e-05/0.04671, allocations: 17 kB / 338.2 MB, free: 4.496 MB / 298.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.263e-05/0.04674, allocations: 55.42 kB / 338.3 MB, free: 4.434 MB / 298.7 MB
Notification: Performance of pre-optimization done (n=98): time 2.455e-06/0.04675, allocations: 0 / 338.3 MB, free: 4.434 MB / 298.7 MB
Notification: Performance of matching and sorting (n=98): time 0.01648/0.06323, allocations: 4.279 MB / 342.6 MB, free: 140 kB / 298.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.502e-05/0.06327, allocations: 90.11 kB / 342.7 MB, free: 32 kB / 298.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001195/0.06447, allocations: 1.389 MB / 344.1 MB, free: 14.6 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.479e-05/0.06452, allocations: 45.7 kB / 344.1 MB, free: 14.55 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003653/0.06489, allocations: 0.6279 MB / 344.7 MB, free: 13.91 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002319/0.06512, allocations: 352.9 kB / 345.1 MB, free: 13.57 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003006/0.06542, allocations: 251.4 kB / 345.3 MB, free: 13.31 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001124/0.06553, allocations: 365.8 kB / 345.7 MB, free: 12.95 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002721/0.0658, allocations: 134.8 kB / 345.8 MB, free: 12.82 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004652/0.06627, allocations: 0.5111 MB / 346.3 MB, free: 12.14 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0008575/0.06713, allocations: 0.7747 MB / 347.1 MB, free: 11.21 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.865e-06/0.06713, allocations: 4 kB / 347.1 MB, free: 11.2 MB / 314.7 MB
Notification: Performance of matching and sorting (n=173) (initialization): time 0.003504/0.07064, allocations: 1.396 MB / 348.5 MB, free: 9.793 MB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.92e-05/0.07066, allocations: 8 kB / 348.5 MB, free: 9.785 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.927e-05/0.07068, allocations: 16 kB / 348.5 MB, free: 9.77 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.004725/0.0754, allocations: 1.163 MB / 349.7 MB, free: 8.602 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005398/0.07594, allocations: 219.6 kB / 349.9 MB, free: 8.387 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.007347/0.08329, allocations: 4.192 MB / 354.1 MB, free: 4.125 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0007712/0.08406, allocations: 154.9 kB / 354.2 MB, free: 3.973 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.326e-05/0.08414, allocations: 51.98 kB / 354.3 MB, free: 3.922 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 52
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (115):
 * Single equations (assignments): 114
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,49)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002827/0.08443, allocations: 184.3 kB / 354.5 MB, free: 3.73 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000212/0.08464, allocations: 131.9 kB / 354.6 MB, free: 3.602 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002472/0.08489, allocations: 227.7 kB / 354.8 MB, free: 3.371 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.115e-06/0.08489, allocations: 12 kB / 354.8 MB, free: 3.359 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.709e-06/0.0849, allocations: 4 kB / 354.8 MB, free: 3.355 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.327e-06/0.08491, allocations: 7.922 kB / 354.8 MB, free: 3.348 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000999/0.08591, allocations: 0.7022 MB / 355.5 MB, free: 2.625 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.518e-06/0.08591, allocations: 0 / 355.5 MB, free: 2.625 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000238/0.08615, allocations: 75.91 kB / 355.6 MB, free: 2.551 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.004662/0.09081, allocations: 1.13 MB / 356.7 MB, free: 1.414 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.329e-05/0.09086, allocations: 16 kB / 356.8 MB, free: 1.398 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.006978/0.09784, allocations: 4.071 MB / 360.8 MB, free: 13.23 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.787e-06/0.09785, allocations: 7.938 kB / 360.8 MB, free: 13.22 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003573/0.1014, allocations: 1.452 MB / 362.3 MB, free: 11.74 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0004498/0.1019, allocations: 233.1 kB / 362.5 MB, free: 11.52 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001718/0.102, allocations: 19.98 kB / 362.5 MB, free: 11.5 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.00053/0.1026, allocations: 35.83 kB / 362.6 MB, free: 11.46 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001763/0.1027, allocations: 97.28 kB / 362.7 MB, free: 11.36 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.152e-05/0.1028, allocations: 12 kB / 362.7 MB, free: 11.35 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0006608/0.1034, allocations: 0.7121 MB / 363.4 MB, free: 10.61 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.2e-07/0.1034, allocations: 0 / 363.4 MB, free: 10.61 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001254/0.1047, allocations: 0.6557 MB / 364.1 MB, free: 9.957 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 1 (hemoglobinConservationLaw.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (40):
 * Single equations (assignments): 39
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,49)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001401/0.1048, allocations: 96.3 kB / 364.1 MB, free: 9.855 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.002043/0.1069, allocations: 1.181 MB / 365.3 MB, free: 8.66 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.592e-05/0.1069, allocations: 24.5 kB / 365.4 MB, free: 8.637 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.001534/0.1084, allocations: 0.8498 MB / 366.2 MB, free: 7.77 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001083/0.1095, allocations: 330.7 kB / 366.5 MB, free: 7.449 MB / 330.7 MB
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit %: Parse error
Error: Error parsing unit kcal/mol: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01337/0.1229, allocations: 2.847 MB / 369.4 MB, free: 4.562 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003431/0.1232, allocations: 391.5 kB / 369.8 MB, free: 4.156 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0003795/0.1236, allocations: 147.2 kB / 369.9 MB, free: 4.008 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005339/0.1242, allocations: 313.1 kB / 370.2 MB, free: 3.699 MB / 330.7 MB
Notification: Performance of SimCode: time 1.122e-06/0.1242, allocations: 0 / 370.2 MB, free: 3.699 MB / 330.7 MB
Notification: Performance of Templates: time 0.06507/0.1892, allocations: 40.21 MB / 410.4 MB, free: 11.86 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC -abortSlowSimulation -alarm=240  -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.911037116777152]