Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009065/0.0009065, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009224/0.0009224, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9551/0.9551, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.07972/0.07972, allocations: 12.76 MB / 273 MB, free: 164 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.062e-06/1.062e-06, allocations: 0 / 293.9 MB, free: 12.02 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.063e-05/1.169e-05, allocations: 2.312 kB / 293.9 MB, free: 12.02 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.004253/0.004265, allocations: 5.763 MB / 299.7 MB, free: 8.137 MB / 266.7 MB
Notification: Performance of NFInst.instExpressions: time 0.004991/0.009256, allocations: 5.801 MB / 305.5 MB, free: 4.449 MB / 266.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002719/0.009528, allocations: 44.34 kB / 305.5 MB, free: 4.422 MB / 266.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0002525/0.009781, allocations: 186.8 kB / 305.7 MB, free: 4.289 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001403/0.01118, allocations: 1.034 MB / 306.7 MB, free: 3.551 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001238/0.01242, allocations: 1.024 MB / 307.8 MB, free: 2.84 MB / 266.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001471/0.01389, allocations: 3.245 MB / 311 MB, free: 72 kB / 266.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0005505/0.01444, allocations: 0.5902 MB / 311.6 MB, free: 15.44 MB / 282.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001282/0.01573, allocations: 1.637 MB / 313.2 MB, free: 13.8 MB / 282.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001395/0.01712, allocations: 1.496 MB / 314.7 MB, free: 12.3 MB / 282.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003203/0.01744, allocations: 168 kB / 314.9 MB, free: 12.13 MB / 282.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0003147/0.01776, allocations: 180 kB / 315.1 MB, free: 11.96 MB / 282.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0004584/0.01821, allocations: 0.6849 MB / 315.7 MB, free: 11.27 MB / 282.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0007394/0.01895, allocations: 0.8648 MB / 316.6 MB, free: 10.4 MB / 282.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001759/0.02071, allocations: 2.546 MB / 319.2 MB, free: 7.848 MB / 282.7 MB
Notification: Performance of FrontEnd - DAE generated: time 2.124e-06/0.02071, allocations: 0 / 319.2 MB, free: 7.848 MB / 282.7 MB
Notification: Performance of FrontEnd: time 1.192e-06/0.02072, allocations: 0 / 319.2 MB, free: 7.848 MB / 282.7 MB
Notification: Performance of Transformations before backend: time 6.233e-05/0.02078, allocations: 0 / 319.2 MB, free: 7.848 MB / 282.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 387
 * Number of variables: 387
Notification: Performance of Generate backend data structure: time 0.003196/0.02397, allocations: 2.862 MB / 322 MB, free: 4.941 MB / 282.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.005e-05/0.024, allocations: 11.98 kB / 322 MB, free: 4.93 MB / 282.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006328/0.02464, allocations: 360.6 kB / 322.4 MB, free: 4.578 MB / 282.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001617/0.02625, allocations: 1.417 MB / 323.8 MB, free: 3.094 MB / 282.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.802e-05/0.02632, allocations: 123.4 kB / 323.9 MB, free: 2.973 MB / 282.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001543/0.02648, allocations: 164.4 kB / 324.1 MB, free: 2.812 MB / 282.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00122/0.0277, allocations: 1.18 MB / 325.3 MB, free: 1.574 MB / 282.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.621e-05/0.02772, allocations: 3.938 kB / 325.3 MB, free: 1.57 MB / 282.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001002/0.02782, allocations: 64 kB / 325.3 MB, free: 1.508 MB / 282.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.983e-05/0.02788, allocations: 66.91 kB / 325.4 MB, free: 1.441 MB / 282.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0007236/0.02861, allocations: 0.5085 MB / 325.9 MB, free: 0.9219 MB / 282.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004918/0.03352, allocations: 4.189 MB / 330.1 MB, free: 12.59 MB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0006617/0.03419, allocations: 0.6992 MB / 330.8 MB, free: 11.81 MB / 298.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002723/0.03446, allocations: 248.7 kB / 331 MB, free: 11.55 MB / 298.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 5.559e-05/0.03451, allocations: 21 kB / 331.1 MB, free: 11.52 MB / 298.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.055e-05/0.03455, allocations: 59.44 kB / 331.1 MB, free: 11.46 MB / 298.7 MB
Notification: Performance of pre-optimization done (n=118): time 2.234e-06/0.03455, allocations: 0 / 331.1 MB, free: 11.46 MB / 298.7 MB
Notification: Performance of matching and sorting (n=118): time 0.004563/0.03911, allocations: 2.054 MB / 333.2 MB, free: 9.387 MB / 298.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.221e-05/0.03919, allocations: 256.3 kB / 333.4 MB, free: 9.082 MB / 298.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001077/0.04027, allocations: 1.566 MB / 335 MB, free: 7.488 MB / 298.7 MB
Notification: Performance of collectPreVariables (initialization): time 6.674e-05/0.04034, allocations: 53.7 kB / 335 MB, free: 7.43 MB / 298.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003494/0.04069, allocations: 0.7736 MB / 335.8 MB, free: 6.645 MB / 298.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.000238/0.04092, allocations: 440.2 kB / 336.2 MB, free: 6.211 MB / 298.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003172/0.04124, allocations: 327.2 kB / 336.6 MB, free: 5.887 MB / 298.7 MB
Notification: Performance of setup shared object (initialization): time 7.43e-05/0.04132, allocations: 313 kB / 336.9 MB, free: 5.578 MB / 298.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002953/0.04161, allocations: 202.8 kB / 337.1 MB, free: 5.379 MB / 298.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005116/0.04212, allocations: 0.7669 MB / 337.8 MB, free: 4.34 MB / 298.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0009533/0.04308, allocations: 1.146 MB / 339 MB, free: 2.918 MB / 298.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.418e-06/0.04309, allocations: 4 kB / 339 MB, free: 2.914 MB / 298.7 MB
Notification: Performance of matching and sorting (n=226) (initialization): time 0.002642/0.04573, allocations: 1.554 MB / 340.5 MB, free: 1.348 MB / 298.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.07e-05/0.04575, allocations: 16.12 kB / 340.5 MB, free: 1.332 MB / 298.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.812e-05/0.04577, allocations: 23.94 kB / 340.6 MB, free: 1.309 MB / 298.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.00309/0.04886, allocations: 1.249 MB / 341.8 MB, free: 52 kB / 298.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006124/0.04947, allocations: 355.4 kB / 342.2 MB, free: 15.7 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005212/0.05468, allocations: 3.755 MB / 345.9 MB, free: 11.88 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006891/0.05537, allocations: 206.5 kB / 346.1 MB, free: 11.68 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.683e-05/0.05545, allocations: 64 kB / 346.2 MB, free: 11.62 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 89
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (183):
 * Single equations (assignments): 182
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of prepare postOptimizeDAE: time 0.0003209/0.05577, allocations: 228 kB / 346.4 MB, free: 11.38 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002349/0.056, allocations: 159.8 kB / 346.6 MB, free: 11.23 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002246/0.05623, allocations: 274.2 kB / 346.8 MB, free: 10.96 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.765e-06/0.05623, allocations: 12 kB / 346.8 MB, free: 10.95 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.002e-06/0.05624, allocations: 4 kB / 346.8 MB, free: 10.94 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.696e-06/0.05625, allocations: 3.984 kB / 346.9 MB, free: 10.94 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004251/0.0605, allocations: 2.904 MB / 349.8 MB, free: 7.844 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.907e-06/0.06051, allocations: 12 kB / 349.8 MB, free: 7.832 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003049/0.06081, allocations: 159.8 kB / 349.9 MB, free: 7.676 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.003346/0.06416, allocations: 1.232 MB / 351.2 MB, free: 6.438 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.415e-05/0.06423, allocations: 43.98 kB / 351.2 MB, free: 6.395 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.004492/0.06873, allocations: 3.411 MB / 354.6 MB, free: 2.875 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.897e-06/0.06874, allocations: 15.94 kB / 354.6 MB, free: 2.859 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00268/0.07141, allocations: 2.291 MB / 356.9 MB, free: 408 kB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0004154/0.07183, allocations: 300.7 kB / 357.2 MB, free: 104 kB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001511/0.07198, allocations: 43.98 kB / 357.3 MB, free: 60 kB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005493/0.07253, allocations: 55.88 kB / 357.3 MB, free: 4 kB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001925/0.07272, allocations: 152 kB / 357.5 MB, free: 15.86 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.401e-05/0.07277, allocations: 40 kB / 357.5 MB, free: 15.82 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0008456/0.07361, allocations: 0.7909 MB / 358.3 MB, free: 15.01 MB / 330.7 MB
Notification: Performance of sort global known variables: time 9e-08/0.07361, allocations: 0 / 358.3 MB, free: 15.01 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001373/0.07499, allocations: 0.7727 MB / 359.1 MB, free: 14.23 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 55
 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (89):
 * Single equations (assignments): 88
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001472/0.07513, allocations: 136 kB / 359.2 MB, free: 14.09 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001706/0.07684, allocations: 1.293 MB / 360.5 MB, free: 12.79 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.7e-05/0.07687, allocations: 29.81 kB / 360.5 MB, free: 12.77 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0008862/0.07775, allocations: 0.7674 MB / 361.3 MB, free: 11.98 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00144/0.07919, allocations: 0.4884 MB / 361.8 MB, free: 11.51 MB / 330.7 MB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Error: Error parsing unit %: Parse error
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004749/0.08394, allocations: 4.146 MB / 365.9 MB, free: 7.141 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004531/0.08439, allocations: 0.5692 MB / 366.5 MB, free: 6.547 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0004166/0.08481, allocations: 201.8 kB / 366.7 MB, free: 6.344 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005842/0.0854, allocations: 411.1 kB / 367.1 MB, free: 5.934 MB / 330.7 MB
Notification: Performance of SimCode: time 7.22e-07/0.0854, allocations: 0 / 367.1 MB, free: 5.934 MB / 330.7 MB
Notification: Performance of Templates: time 0.04407/0.1295, allocations: 46.28 MB / 413.4 MB, free: 8.117 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC -abortSlowSimulation -alarm=240  -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.8985673040151596]