Environment - simulationEnvironment:
startTime=0
stopTime=0.05
tolerance=1e-06
numberOfIntervals=2500
stepSize=2e-05
Regular simulation: ./Bodylight_Bodylight.Chemical.Examples.AcidBase.Phosphate -abortSlowSimulation -alarm=240  -lv LOG_STATS
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((HPO4.state >= 0.0)) --> "Variable violating min constraint: 0.0 <= HPO4.state, has value: -1.70311e-16"
LOG_ASSERT        | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable]
|                 | |       | The following assertion has been violated at time 0.000000
|                 | |       | ((chemicalReaction2.substrates[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= chemicalReaction2.substrates[1].conc, has value: -1.70311e-13"
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_NLS           | error   | residualFunc107: Iteration variable `H3PO4.state` is inf.
LOG_ASSERT        | debug   | Solving non-linear system 107 failed at time=2e-05.
|                 | |       | For more information please use -lv LOG_NLS.
LOG_STDOUT        | warning | Integrator attempt to handle a problem with a called assert.
LOG_NLS           | error   | residualFunc107: Iteration variable `H3PO4.state` is inf.
LOG_ASSERT        | debug   | Solving non-linear system 107 failed at time=1e-05.
|                 | |       | For more information please use -lv LOG_NLS.
LOG_STDOUT        | info    | model terminate | Simulation terminated by an assert at time: 1e-05
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |   0.00215802s          reading init.xml
|                 | |       | | |  0.000209434s          reading info.xml
|                 | |       | | |  0.000136788s [  0.1%] pre-initialization
|                 | |       | | |    0.0262672s [ 25.1%] initialization
|                 | |       | | |            0s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |            0s [  0.0%] creating output-file
|                 | |       | | |            0s [  0.0%] event-handling
|                 | |       | | |            0s [  0.0%] overhead
|                 | |       | | |    0.0781409s [ 74.7%] simulation
|                 | |       | | |     0.104545s [100.0%] total
|                 | |       | | events
|                 | |       | | |     0 state events
|                 | |       | | |     0 time events
|                 | |       | | solver: gbode
|                 | |       | | |     2 steps taken
|                 | |       | | |     8 calls of functionODE
|                 | |       | | |     1 evaluations of jacobian
|                 | |       | | |     0 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 8.53e-07s time of jacobian evaluation