Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001143/0.001143, allocations: 80.81 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0012/0.0012, allocations: 173 kB / 23.36 MB, free: 1.129 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.944/0.944, allocations: 177.1 MB / 203.8 MB, free: 5.496 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo): time 0.03815/0.03815, allocations: 9.559 MB / 269.8 MB, free: 3.836 MB / 250.7 MB " [Timeout remaining time 180] Using package BioChem with version 1.1.3 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.3/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2100,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.724e-06/1.724e-06, allocations: 0 / 289.2 MB, free: 460 kB / 266.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 2.453e-05/2.625e-05, allocations: 2.312 kB / 289.2 MB, free: 456 kB / 266.7 MB Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.121/0.121, allocations: 8.929 MB / 298.1 MB, free: 14.88 MB / 266.7 MB Notification: Performance of NFInst.instExpressions: time 0.006839/0.1279, allocations: 3.515 MB / 301.6 MB, free: 12.28 MB / 266.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.001685/0.1296, allocations: 113.5 kB / 301.8 MB, free: 12.28 MB / 266.7 MB Notification: Performance of NFTyping.typeComponents: time 0.00103/0.1306, allocations: 376.7 kB / 302.1 MB, free: 11.98 MB / 266.7 MB Notification: Performance of NFTyping.typeBindings: time 0.001383/0.132, allocations: 0.559 MB / 302.7 MB, free: 11.56 MB / 266.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.001083/0.1331, allocations: 0.5828 MB / 303.3 MB, free: 11.16 MB / 266.7 MB Notification: Performance of NFFlatten.flatten: time 0.002112/0.1352, allocations: 2.409 MB / 305.7 MB, free: 9.699 MB / 266.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.001002/0.1362, allocations: 0.8304 MB / 306.5 MB, free: 9.102 MB / 266.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001567/0.1377, allocations: 1.558 MB / 308.1 MB, free: 8.047 MB / 266.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001022/0.1388, allocations: 0.8143 MB / 308.9 MB, free: 7.543 MB / 266.7 MB Notification: Performance of NFPackage.collectConstants: time 0.0004048/0.1392, allocations: 317 kB / 309.2 MB, free: 7.543 MB / 266.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0004079/0.1396, allocations: 322 kB / 309.5 MB, free: 7.512 MB / 266.7 MB Notification: Performance of NFScalarize.scalarize: time 0.000244/0.1398, allocations: 0.5997 MB / 310.1 MB, free: 6.91 MB / 266.7 MB Notification: Performance of NFVerifyModel.verify: time 0.0006328/0.1405, allocations: 0.8731 MB / 311 MB, free: 6.035 MB / 266.7 MB Notification: Performance of NFConvertDAE.convert: time 0.001349/0.1418, allocations: 1.763 MB / 312.7 MB, free: 4.266 MB / 266.7 MB Notification: Performance of FrontEnd - DAE generated: time 2.845e-06/0.1418, allocations: 0 / 312.7 MB, free: 4.266 MB / 266.7 MB Notification: Performance of FrontEnd: time 1.302e-06/0.1418, allocations: 0 / 312.7 MB, free: 4.266 MB / 266.7 MB Notification: Performance of Transformations before backend: time 3.233e-05/0.1418, allocations: 0 / 312.7 MB, free: 4.266 MB / 266.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 687 * Number of variables: 687 Notification: Performance of Generate backend data structure: time 0.002129/0.144, allocations: 2.291 MB / 315 MB, free: 1.957 MB / 266.7 MB Notification: Performance of prepare preOptimizeDAE: time 3.174e-05/0.144, allocations: 8.031 kB / 315 MB, free: 1.949 MB / 266.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004237/0.1444, allocations: 392.7 kB / 315.4 MB, free: 1.566 MB / 266.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006187/0.145, allocations: 440.1 kB / 315.8 MB, free: 1.113 MB / 266.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001585/0.1452, allocations: 304.8 kB / 316.1 MB, free: 0.7891 MB / 266.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002164/0.1454, allocations: 285.3 kB / 316.4 MB, free: 0.5117 MB / 266.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001868/0.1473, allocations: 1.727 MB / 318.1 MB, free: 14.7 MB / 282.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 6.479e-05/0.1473, allocations: 11.88 kB / 318.2 MB, free: 14.68 MB / 282.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001266/0.1475, allocations: 108 kB / 318.3 MB, free: 14.58 MB / 282.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.738e-05/0.1475, allocations: 68 kB / 318.3 MB, free: 14.51 MB / 282.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001031/0.1486, allocations: 0.6364 MB / 319 MB, free: 13.85 MB / 282.7 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007817/0.1564, allocations: 6.371 MB / 325.3 MB, free: 7.223 MB / 282.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.001042/0.1574, allocations: 0.8513 MB / 326.2 MB, free: 6.34 MB / 282.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003015/0.1577, allocations: 251.1 kB / 326.4 MB, free: 6.082 MB / 282.7 MB Notification: Performance of preOpt evalFunc (simulation): time 5.148e-05/0.1578, allocations: 31.41 kB / 326.5 MB, free: 6.055 MB / 282.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.394e-05/0.1578, allocations: 51.88 kB / 326.5 MB, free: 5.996 MB / 282.7 MB Notification: Performance of pre-optimization done (n=139): time 3.246e-06/0.1578, allocations: 0 / 326.5 MB, free: 5.996 MB / 282.7 MB Notification: Performance of matching and sorting (n=171): time 0.00634/0.1641, allocations: 3.872 MB / 330.4 MB, free: 2.184 MB / 282.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 8.076e-05/0.1642, allocations: 183.4 kB / 330.6 MB, free: 1.965 MB / 282.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003622/0.1646, allocations: 490.5 kB / 331 MB, free: 1.477 MB / 282.7 MB Notification: Performance of collectPreVariables (initialization): time 6.324e-05/0.1646, allocations: 49.7 kB / 331.1 MB, free: 1.422 MB / 282.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0005698/0.1652, allocations: 0.9607 MB / 332.1 MB, free: 460 kB / 282.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.0005076/0.1657, allocations: 0.6584 MB / 332.7 MB, free: 15.79 MB / 298.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003914/0.1661, allocations: 355.9 kB / 333.1 MB, free: 15.43 MB / 298.7 MB Notification: Performance of setup shared object (initialization): time 9.644e-05/0.1662, allocations: 326 kB / 333.4 MB, free: 15.11 MB / 298.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004208/0.1666, allocations: 313.4 kB / 333.7 MB, free: 14.8 MB / 298.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007066/0.1673, allocations: 0.8325 MB / 334.5 MB, free: 13.7 MB / 298.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.001614/0.169, allocations: 1.574 MB / 336.1 MB, free: 11.86 MB / 298.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.828e-06/0.169, allocations: 8 kB / 336.1 MB, free: 11.85 MB / 298.7 MB Notification: Performance of matching and sorting (n=291) (initialization): time 0.001152/0.1701, allocations: 1.161 MB / 337.3 MB, free: 10.68 MB / 298.7 MB Notification: Performance of prepare postOptimizeDAE: time 2.527e-05/0.1701, allocations: 12 kB / 337.3 MB, free: 10.67 MB / 298.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.219e-05/0.1702, allocations: 20 kB / 337.3 MB, free: 10.65 MB / 298.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 2.649e-05/0.1702, allocations: 32 kB / 337.3 MB, free: 10.62 MB / 298.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001179/0.1714, allocations: 0.6403 MB / 338 MB, free: 9.98 MB / 298.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.53e-05/0.1714, allocations: 47.16 kB / 338 MB, free: 9.938 MB / 298.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004388/0.1718, allocations: 75.95 kB / 338.1 MB, free: 9.863 MB / 298.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.51e-05/0.1719, allocations: 72 kB / 338.2 MB, free: 9.793 MB / 298.7 MB Warning: Assuming fixed start value for the following 41 variables: V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = 0.0 start = 78000.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.I_po.c:VARIABLE(min = 0.0 start = 3.6 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real BetaCell.Y.c:VARIABLE(min = -1e60 start = 0.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = 0.0 start = 2.34e12 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = 0.0 start = 1.61e10 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = 0.0 start = 1.68e7 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = 0.0 start = 5.8e8 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real BetaCell.G_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(fixed = true ) \"Insulin action on glucose utilization, signed deviation from basal\" type: Real PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 86 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (291): * Single equations (assignments): 291 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005792/0.1725, allocations: 407.2 kB / 338.6 MB, free: 9.418 MB / 298.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001664/0.1727, allocations: 119.9 kB / 338.7 MB, free: 9.301 MB / 298.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0008372/0.1735, allocations: 0.7546 MB / 339.4 MB, free: 8.535 MB / 298.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.269e-05/0.1735, allocations: 20 kB / 339.4 MB, free: 8.516 MB / 298.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.651e-06/0.1735, allocations: 3.938 kB / 339.4 MB, free: 8.512 MB / 298.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.261e-05/0.1735, allocations: 11.91 kB / 339.5 MB, free: 8.5 MB / 298.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003422/0.1769, allocations: 1.75 MB / 341.2 MB, free: 6.711 MB / 298.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.57e-06/0.177, allocations: 4 kB / 341.2 MB, free: 6.707 MB / 298.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001132/0.1781, allocations: 475.4 kB / 341.7 MB, free: 6.242 MB / 298.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 1.334e-05/0.1781, allocations: 8 kB / 341.7 MB, free: 6.234 MB / 298.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.317e-05/0.1782, allocations: 51.97 kB / 341.7 MB, free: 6.184 MB / 298.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.861e-06/0.1782, allocations: 12 kB / 341.7 MB, free: 6.172 MB / 298.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.244e-06/0.1782, allocations: 0 / 341.7 MB, free: 6.172 MB / 298.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001329/0.1795, allocations: 1.524 MB / 343.3 MB, free: 4.625 MB / 298.7 MB Notification: Performance of postOpt removeConstants (simulation): time 8.575e-05/0.1796, allocations: 83.34 kB / 343.4 MB, free: 4.543 MB / 298.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.25e-05/0.1797, allocations: 44 kB / 343.4 MB, free: 4.5 MB / 298.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003201/0.18, allocations: 39.98 kB / 343.4 MB, free: 4.461 MB / 298.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001165/0.1801, allocations: 113 kB / 343.5 MB, free: 4.352 MB / 298.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.241e-05/0.1802, allocations: 43.95 kB / 343.6 MB, free: 4.309 MB / 298.7 MB Notification: Performance of sorting global known variables: time 0.0001139/0.1803, allocations: 172.4 kB / 343.8 MB, free: 4.137 MB / 298.7 MB Notification: Performance of sort global known variables: time 4e-08/0.1803, allocations: 0 / 343.8 MB, free: 4.137 MB / 298.7 MB Notification: Performance of remove unused functions: time 0.0009761/0.1813, allocations: 424 kB / 344.2 MB, free: 3.723 MB / 298.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 7 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (173): * Single equations (assignments): 173 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001827/0.1814, allocations: 148.8 kB / 344.3 MB, free: 3.578 MB / 298.7 MB Notification: Performance of simCode: created initialization part: time 0.0009264/0.1824, allocations: 0.9444 MB / 345.3 MB, free: 2.625 MB / 298.7 MB Notification: Performance of simCode: created event and clocks part: time 2.477e-05/0.1824, allocations: 13.81 kB / 345.3 MB, free: 2.609 MB / 298.7 MB Notification: Performance of simCode: created simulation system equations: time 0.0003734/0.1828, allocations: 463.9 kB / 345.7 MB, free: 2.156 MB / 298.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006577/0.1834, allocations: 245.2 kB / 346 MB, free: 1.938 MB / 298.7 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004076/0.1875, allocations: 3.488 MB / 349.5 MB, free: 14.38 MB / 314.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002492/0.1878, allocations: 338.3 kB / 349.8 MB, free: 14.02 MB / 314.7 MB Notification: Performance of simCode: alias equations: time 0.0004701/0.1882, allocations: 161.5 kB / 349.9 MB, free: 13.86 MB / 314.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000505/0.1887, allocations: 337.1 kB / 350.3 MB, free: 13.52 MB / 314.7 MB Notification: Performance of SimCode: time 1.333e-06/0.1887, allocations: 0 / 350.3 MB, free: 13.52 MB / 314.7 MB Notification: Performance of Templates: time 0.02194/0.2107, allocations: 17.5 MB / 367.8 MB, free: 12.37 MB / 330.7 MB " [Timeout remaining time 660] make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile [Timeout 660] (rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & ./BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel -abortSlowSimulation -alarm=240 -lv LOG_STATS > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 3.1756591931916773]