Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0002839/0.0002839, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0001897/0.0001897, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.1064/0.1064, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Drugs/ATC/B/B02BD15.mo:9:22-9:32:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 6000000000 into a real [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 0.6172/0.6172, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 179] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 1.092e-06/1.092e-06, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 2.001e-05/2.11e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites): time 0.007381/0.007402, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.004631/0.01203, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 0.0001639/0.0122, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 0.0002101/0.01241, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeBindings: time 0.0005257/0.01293, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeClassSections: time 0.0003/0.01323, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 0.003491/0.01672, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 0.0002031/0.01693, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 0.003816/0.02074, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 0.0002608/0.021, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 6.011e-05/0.02106, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 6.267e-05/0.02113, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 0.0001044/0.02123, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 0.0002184/0.02145, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 0.0004388/0.02189, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 6.908e-05/0.02196, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 1.924e-06/0.02196, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 6.533e-06/0.02197, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 105 * Number of variables: 105 Notification: Performance of Generate backend data structure: time 0.001024/0.02299, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 8.097e-05/0.02307, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001287/0.0232, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003252/0.02352, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.003081/0.0266, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 8.651e-05/0.02669, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.000514/0.02721, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 3.111e-05/0.02724, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.936e-05/0.0273, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.096e-05/0.02731, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003084/0.02762, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001099/0.02871, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.0003209/0.02903, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 0.0001343/0.02917, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 1.448e-05/0.02918, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003804/0.02956, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=74): time 6.172e-06/0.02957, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=79): time 0.002117/0.03169, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 7.179e-05/0.03176, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001342/0.03189, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 7.141e-05/0.03196, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 7.769e-05/0.03204, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 0.0001916/0.03223, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001584/0.03239, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 3.752e-05/0.03243, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 0.003152/0.03558, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001972/0.03578, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 0.0005508/0.03633, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.738e-06/0.03634, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=113) (initialization): time 0.0006251/0.03696, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 5.834e-05/0.03702, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.264e-05/0.03704, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 3.323e-05/0.03707, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005731/0.03764, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.505e-05/0.03767, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002476/0.03791, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.413e-05/0.03797, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 22 variables: periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real acetaminophen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluconic_acid.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real sulfate_conjugates.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real NAPQI.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluthatione_conjugation.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real acetaminophen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real acetaminophen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.rising:DISCRETE(fixed = true protected = true ) type: Boolean NAPQI.rising:DISCRETE(fixed = true protected = true ) type: Boolean sulfate_conjugates.rising:DISCRETE(fixed = true protected = true ) type: Boolean gluconic_acid.rising:DISCRETE(fixed = true protected = true ) type: Boolean acetaminophen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 22 * Number of states: 0 () * Number of discrete variables: 45 ($PRE.acetaminophen.Cmin,acetaminophen.Cmin,$PRE.acetaminophen.Cmax,acetaminophen.Cmax,$PRE.gluconic_acid.Cmin,gluconic_acid.Cmin,$PRE.gluconic_acid.Cmax,gluconic_acid.Cmax,$PRE.sulfate_conjugates.Cmin,sulfate_conjugates.Cmin,$PRE.sulfate_conjugates.Cmax,sulfate_conjugates.Cmax,$PRE.NAPQI.Cmin,NAPQI.Cmin,$PRE.NAPQI.Cmax,NAPQI.Cmax,$PRE.gluthatione_conjugation.Cmin,gluthatione_conjugation.Cmin,$PRE.gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmax,$PRE.gluthatione_conjugation.rising,$PRE.NAPQI.rising,$PRE.sulfate_conjugates.rising,$PRE.gluconic_acid.rising,$PRE.acetaminophen.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,gluthatione_conjugation.rising,NAPQI.rising,sulfate_conjugates.rising,gluconic_acid.rising,acetaminophen.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (107): * Single equations (assignments): 101 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003344/0.0383, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 8.839e-05/0.03839, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.111e-05/0.03848, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.436e-06/0.03849, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 1.06e-05/0.0385, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.175e-06/0.03851, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003878/0.04239, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.3e-06/0.04239, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004609/0.04285, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 7.965e-06/0.04286, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.075e-05/0.04291, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.786e-06/0.04292, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.763e-06/0.04292, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0007706/0.04369, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 6.473e-05/0.04376, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001616/0.04392, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002047/0.04413, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001365/0.04426, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.028e-05/0.04431, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 6.396e-05/0.04438, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 6.082e-06/0.04438, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.007859/0.05224, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 16 (periodicDose.TotalCumulativeMass,periodicDose.variableDose.TotalCumulativeMass,acetaminophen.C,acetaminophen.AUC,gluconic_acid.C,gluconic_acid.AUC,sulfate_conjugates.C,sulfate_conjugates.AUC,NAPQI.C,NAPQI.AUC,gluthatione_conjugation.C,gluthatione_conjugation.AUC,kidney.MExc,kidney1.MExc,kidney11.MExc,kidney2.MExc) * Number of discrete variables: 28 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,periodicDose.pulse.T_start,periodicDose.pulse.count,acetaminophen.Cmax,acetaminophen.Cmin,acetaminophen.rising,gluconic_acid.Cmax,gluconic_acid.Cmin,gluconic_acid.rising,sulfate_conjugates.Cmax,sulfate_conjugates.Cmin,sulfate_conjugates.rising,NAPQI.Cmax,NAPQI.Cmin,NAPQI.rising,gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmin,gluthatione_conjugation.rising) * Number of discrete states: 26 (periodicDose.pulse.count,NAPQI.Cmin,$whenCondition5,NAPQI.Cmax,$whenCondition4,NAPQI.rising,gluconic_acid.Cmin,$whenCondition9,gluconic_acid.Cmax,$whenCondition8,gluconic_acid.rising,sulfate_conjugates.Cmin,$whenCondition7,sulfate_conjugates.Cmax,$whenCondition6,sulfate_conjugates.rising,gluthatione_conjugation.Cmin,$whenCondition3,gluthatione_conjugation.Cmax,$whenCondition2,gluthatione_conjugation.rising,acetaminophen.Cmin,$whenCondition11,acetaminophen.Cmax,$whenCondition10,acetaminophen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (64): * Single equations (assignments): 57 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000247/0.05249, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.0005951/0.05308, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 2.254e-06/0.05309, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 0.0002983/0.05338, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007067/0.05409, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001632/0.05572, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001129/0.05584, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 0.000171/0.05601, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003584/0.05636, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 3.216e-05/0.0564, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Templates: time 0.001879/0.05828, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 900] [Calling sys.exit(0), Time elapsed: 1.399710149038583]