Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0003085/0.0003085, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0002028/0.0002028, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.1116/0.1116, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.004387/0.004387, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Bodylight.Chemical.Examples.AcidBase.AlbuminTitration,startTime=0,stopTime=0.0235,tolerance=1e-06,numberOfIntervals=2500,outputFormat="empty",variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.AcidBase.AlbuminTitration",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Bodylight.Chemical.Examples.AcidBase.AlbuminTitration,startTime=0,stopTime=0.0235,tolerance=1e-06,numberOfIntervals=2500,outputFormat="empty",variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.AcidBase.AlbuminTitration",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 1.152e-06/1.152e-06, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 1.826e-05/1.942e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.AcidBase.AlbuminTitration): time 0.00408/0.0041, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.006118/0.01022, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 0.0001973/0.01042, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 0.0001937/0.01061, allocations: 0 / 0, free: 0 / 0 [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.H3O.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.H3O.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.H3O.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.A.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.A.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.A.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.HA.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.HA.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.HA.Utilities.UnitConversions.findUnit'. Notification: Performance of NFTyping.typeBindings: time 0.004573/0.01518, allocations: 0 / 0, free: 0 / 0 [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.H3O.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.H3O.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.A.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.A.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.HA.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.AcidBase.AlbuminTitration.HA.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. Notification: Performance of NFTyping.typeClassSections: time 0.001157/0.01634, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 0.06949/0.08583, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 0.02035/0.1062, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 0.0849/0.1911, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 0.1021/0.2932, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 0.01397/0.3072, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 0.01219/0.3194, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 0.0217/0.3411, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 0.04075/0.3818, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 0.09159/0.4734, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 0.0257/0.4991, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 4.769e-06/0.4991, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 0.002382/0.5015, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 7426 * Number of variables: 7426 Notification: Performance of Generate backend data structure: time 0.2075/0.709, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 0.007332/0.7163, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 0.02681/0.7431, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.09029/0.8334, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005022/0.8384, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 0.009278/0.8477, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.1146/0.9623, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 0.0008864/0.9632, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.006332/0.9696, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001075/0.9706, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 0.05181/1.022, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.2622/1.285, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.02348/1.308, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 0.01014/1.318, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 0.001186/1.319, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0006424/1.32, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=1533): time 8.734e-05/1.32, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=1533): time 0.5807/1.901, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 0.0007105/1.902, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.09609/1.998, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 0.006962/2.005, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 0.03361/2.038, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 0.0113/2.05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 0.03345/2.083, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 3.169e-05/2.083, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 0.02179/2.105, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 0.03286/2.138, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 0.0447/2.182, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.001623/2.184, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=5244) (initialization): time 0.4853/2.669, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 0.001108/2.67, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.001994/2.672, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 0.6209/3.293, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.02115/3.314, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2865/3.601, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.03922/3.64, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.007102/3.647, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 3277 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (4372): * Single equations (assignments): 4371 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 1 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 0 systems * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(437,436)} Notification: Performance of prepare postOptimizeDAE: time 0.02516/3.672, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 0.009015/3.681, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.01387/3.695, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003155/3.696, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 0.000109/3.696, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0001739/3.696, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.49/4.186, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.000339/4.186, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.004812/4.191, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 0.7084/4.9, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.005338/4.905, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3011/5.206, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.14e-05/5.206, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.4576/5.664, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 0.02162/5.685, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01784/5.703, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03983/5.743, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 0.03281/5.776, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.007412/5.783, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 0.0461/5.829, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 0.005362/5.835, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.09583/5.931, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 221 * Number of states: 219 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* Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (661): * Single equations (assignments): 660 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 1 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 0 systems * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(437,436)} Notification: Performance of Backend phase and start with SimCode phase: time 0.01835/5.949, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.07817/6.027, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 8.19e-05/6.027, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 0.05227/6.079, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.1456/6.225, allocations: 0 / 0, free: 0 / 0 Error: Error parsing unit kcal: Unit not found Error: Error parsing unit meq: Unit not found Error: Error parsing unit kcal/min: Unit not found Error: Error parsing unit kcal/mol: Unit not found Error: Error parsing unit %: Parse error Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.1851/6.41, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 0.03723/6.447, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 0.0635/6.511, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 0.03934/6.55, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 0.004172/6.554, allocations: 0 / 0, free: 0 / 0 Error: Error parsing unit kcal: Unit not found Error: Error parsing unit meq: Unit not found Error: Error parsing unit kcal/min: Unit not found Error: Error parsing unit kcal/mol: Unit not found Error: Error parsing unit meq: Unit not found Error: Error parsing unit kcal/mol: Unit not found Error: Error parsing unit %: Parse error Error: Error parsing unit meq: Unit not found Notification: Performance of Templates: time 0.2831/6.837, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 883] [Calling sys.exit(0), Time elapsed: 17.557021609973162]