Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"[<interactive>:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0002893/0.0002893, allocations: 0 / 0, free: 0 / 0
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.000291/0.000291, allocations: 0 / 0, free: 0 / 0
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.1637/0.1637, allocations: 0 / 0, free: 0 / 0
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.004072/0.004072, allocations: 0 / 0, free: 0 / 0
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: simulate(Bodylight.Chemical.Examples.TwoConcentrationCompartments,startTime=0,stopTime=20,tolerance=1e-06,numberOfIntervals=2500,outputFormat="empty",variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments",simflags="-abortSlowSimulation -alarm=240   -lv LOG_STATS")
simulate(Bodylight.Chemical.Examples.TwoConcentrationCompartments,startTime=0,stopTime=20,tolerance=1e-06,numberOfIntervals=2500,outputFormat="empty",variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments",simflags="-abortSlowSimulation -alarm=240   -lv LOG_STATS") [Timeout 900]
"Notification: Performance of FrontEnd - loaded program: time 1.132e-06/1.132e-06, allocations: 0 / 0, free: 0 / 0
Notification: Performance of FrontEnd - Absyn->SCode: time 0.003041/0.003042, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.TwoConcentrationCompartments): time 0.006566/0.009608, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFInst.instExpressions: time 0.007113/0.01672, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001951/0.01692, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFTyping.typeComponents: time 0.0001808/0.0171, allocations: 0 / 0, free: 0 / 0
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Hydraulic.mo:1482:17-1484:29:writable] Warning: In relation resistor.Resistance == 0.0, == on Real operands is deprecated in non-function contexts.
Notification: Performance of NFTyping.typeBindings: time 0.004096/0.02119, allocations: 0 / 0, free: 0 / 0
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.0009284/0.02212, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFFlatten.flatten: time 0.005722/0.02784, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFFlatten.resolveConnections: time 0.0001138/0.02796, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFEvalConstants.evaluate: time 0.005605/0.03356, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFSimplifyModel.simplify: time 0.002038/0.0356, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFPackage.collectConstants: time 0.0003595/0.03596, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFFlatten.collectFunctions: time 0.003305/0.03926, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFScalarize.scalarize: time 0.0007942/0.04006, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFVerifyModel.verify: time 0.0008356/0.04089, allocations: 0 / 0, free: 0 / 0
Notification: Performance of NFConvertDAE.convert: time 0.004772/0.04567, allocations: 0 / 0, free: 0 / 0
Notification: Performance of FrontEnd - DAE generated: time 0.0002523/0.04592, allocations: 0 / 0, free: 0 / 0
Notification: Performance of FrontEnd: time 1.843e-06/0.04592, allocations: 0 / 0, free: 0 / 0
Notification: Performance of Transformations before backend: time 1.734e-05/0.04594, allocations: 0 / 0, free: 0 / 0
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 164
 * Number of variables: 164
Notification: Performance of Generate backend data structure: time 0.01347/0.0594, allocations: 0 / 0, free: 0 / 0
Notification: Performance of prepare preOptimizeDAE: time 0.0001007/0.0595, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003584/0.06309, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001144/0.06423, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000546/0.06478, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004439/0.06522, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt clockPartitioning (simulation): time 0.005566/0.07079, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt findStateOrder (simulation): time 2.222e-05/0.07081, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002409/0.07105, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.135e-05/0.07106, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009323/0.072, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.009599/0.08159, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt comSubExp (simulation): time 0.001034/0.08263, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt resolveLoops (simulation): time 0.000876/0.0835, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt evalFunc (simulation): time 0.0001146/0.08362, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001699/0.08532, allocations: 0 / 0, free: 0 / 0
Notification: Performance of pre-optimization done (n=123): time 4.809e-06/0.08532, allocations: 0 / 0, free: 0 / 0
Notification: Performance of matching and sorting (n=123): time 0.002353/0.08768, allocations: 0 / 0, free: 0 / 0
Notification: Performance of inlineWhenForInitialization (initialization): time 3.633e-05/0.08771, allocations: 0 / 0, free: 0 / 0
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002557/0.08797, allocations: 0 / 0, free: 0 / 0
Notification: Performance of collectPreVariables (initialization): time 0.000351/0.08832, allocations: 0 / 0, free: 0 / 0
Notification: Performance of collectInitialEqns (initialization): time 0.0001006/0.08842, allocations: 0 / 0, free: 0 / 0
Notification: Performance of collectInitialBindings (initialization): time 0.000345/0.08876, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0007081/0.08947, allocations: 0 / 0, free: 0 / 0
Notification: Performance of setup shared object (initialization): time 3.07e-05/0.0895, allocations: 0 / 0, free: 0 / 0
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007135/0.09022, allocations: 0 / 0, free: 0 / 0
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007416/0.09096, allocations: 0 / 0, free: 0 / 0
Notification: Performance of analyzeInitialSystem (initialization): time 0.002389/0.09335, allocations: 0 / 0, free: 0 / 0
Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.051e-06/0.09335, allocations: 0 / 0, free: 0 / 0
Notification: Performance of matching and sorting (n=237) (initialization): time 0.002052/0.09541, allocations: 0 / 0, free: 0 / 0
Notification: Performance of prepare postOptimizeDAE: time 2.152e-05/0.09543, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.562e-06/0.09543, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt tearingSystem (initialization): time 2.164e-05/0.09546, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.02259/0.118, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.195e-05/0.1181, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001088/0.1192, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002072/0.1194, allocations: 0 / 0, free: 0 / 0
Warning: Assuming fixed start value for the following 1 variables:
         inertia.q_in.q:VARIABLE(flow=true start = advectionStream.SolutionFlow unit = \"m3/s\" fixed = true nominal = 1.6666666666666667e-8 )  \"Volume flow\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 6
 * Number of states: 0 ()
 * Number of discrete variables: 5 (pulse.count,$PRE.pulse.count,pulse.T_start,$PRE.pulse.T_start,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (236):
 * Single equations (assignments): 235
 * Array equations: 0
 * Algorithm blocks: 1
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0007052/0.1201, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002925/0.1204, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002029/0.1224, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.875e-06/0.1224, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.663e-06/0.1224, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.212e-06/0.1224, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001801/0.1242, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.288e-06/0.1242, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02401/0.1482, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt tearingSystem (simulation): time 1.177e-05/0.1482, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0008593/0.1491, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.557e-06/0.1491, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.965e-06/0.1491, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003008/0.1521, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt removeConstants (simulation): time 0.0005298/0.1527, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0004964/0.1532, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009679/0.1541, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0009769/0.1551, allocations: 0 / 0, free: 0 / 0
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001904/0.1553, allocations: 0 / 0, free: 0 / 0
Notification: Performance of sorting global known variables: time 0.0001698/0.1555, allocations: 0 / 0, free: 0 / 0
Notification: Performance of sort global known variables: time 9.799e-06/0.1555, allocations: 0 / 0, free: 0 / 0
Notification: Performance of remove unused functions: time 0.0008697/0.1563, allocations: 0 / 0, free: 0 / 0
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 103 (substance.state,substance1.state,advectionStream.c[2],advectionStream.c[3],advectionStream.c[4],advectionStream.c[5],advectionStream.c[6],advectionStream.c[7],advectionStream.c[8],advectionStream.c[9],advectionStream.c[10],advectionStream.c[11],advectionStream.c[12],advectionStream.c[13],advectionStream.c[14],advectionStream.c[15],advectionStream.c[16],advectionStream.c[17],advectionStream.c[18],advectionStream.c[19],advectionStream.c[20],advectionStream.c[21],advectionStream.c[22],advectionStream.c[23],advectionStream.c[24],advectionStream.c[25],advectionStream.c[26],advectionStream.c[27],advectionStream.c[28],advectionStream.c[29],advectionStream.c[30],advectionStream.c[31],advectionStream.c[32],advectionStream.c[33],advectionStream.c[34],advectionStream.c[35],advectionStream.c[36],advectionStream.c[37],advectionStream.c[38],advectionStream.c[39],advectionStream.c[40],advectionStream.c[41],advectionStream.c[42],advectionStream.c[43],advectionStream.c[44],advectionStream.c[45],advectionStream.c[46],advectionStream.c[47],advectionStream.c[48],advectionStream.c[49],advectionStream.c[50],advectionStream.c[51],advectionStream.c[52],advectionStream.c[53],advectionStream.c[54],advectionStream.c[55],advectionStream.c[56],advectionStream.c[57],advectionStream.c[58],advectionStream.c[59],advectionStream.c[60],advectionStream.c[61],advectionStream.c[62],advectionStream.c[63],advectionStream.c[64],advectionStream.c[65],advectionStream.c[66],advectionStream.c[67],advectionStream.c[68],advectionStream.c[69],advectionStream.c[70],advectionStream.c[71],advectionStream.c[72],advectionStream.c[73],advectionStream.c[74],advectionStream.c[75],advectionStream.c[76],advectionStream.c[77],advectionStream.c[78],advectionStream.c[79],advectionStream.c[80],advectionStream.c[81],advectionStream.c[82],advectionStream.c[83],advectionStream.c[84],advectionStream.c[85],advectionStream.c[86],advectionStream.c[87],advectionStream.c[88],advectionStream.c[89],advectionStream.c[90],advectionStream.c[91],advectionStream.c[92],advectionStream.c[93],advectionStream.c[94],advectionStream.c[95],advectionStream.c[96],advectionStream.c[97],advectionStream.c[98],advectionStream.c[99],elasticVessel.volume,elasticVessel1.volume,inertia.q_in.q)
 * Number of discrete variables: 3 ($whenCondition1,pulse.T_start,pulse.count)
 * Number of discrete states: 1 (pulse.count)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (123):
 * Single equations (assignments): 121
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 2
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0004904/0.1568, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: created initialization part: time 0.001772/0.1586, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: created event and clocks part: time 1.663e-06/0.1586, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: created simulation system equations: time 0.0008505/0.1595, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001187/0.1606, allocations: 0 / 0, free: 0 / 0
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004278/0.1649, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001896/0.1651, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: alias equations: time 0.001154/0.1663, allocations: 0 / 0, free: 0 / 0
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.002142/0.1684, allocations: 0 / 0, free: 0 / 0
Notification: Performance of SimCode: time 4.341e-05/0.1684, allocations: 0 / 0, free: 0 / 0
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Notification: Performance of Templates: time 0.007755/0.1762, allocations: 0 / 0, free: 0 / 0
"
[Timeout remaining time 900]
[Calling sys.exit(0), Time elapsed: 1.0253345295786858]