Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicineSimple.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0002468/0.0002468, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0002206/0.0002206, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.09575/0.09575, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Drugs/ATC/B/B02BD15.mo:9:22-9:32:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 6000000000 into a real [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 0.7715/0.7715, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 179] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Pharmacolibrary.Examples.PK_1C_GentamicineSimple,startTime=0,stopTime=86400,tolerance=1e-06,numberOfIntervals=500,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicineSimple",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Pharmacolibrary.Examples.PK_1C_GentamicineSimple,startTime=0,stopTime=86400,tolerance=1e-06,numberOfIntervals=500,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicineSimple",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 9.21e-07/9.21e-07, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 1.641e-05/1.733e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_1C_GentamicineSimple): time 0.001873/0.001891, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.000209/0.0021, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 3.253e-05/0.002132, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 5.294e-05/0.002185, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeBindings: time 8.678e-05/0.002272, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeClassSections: time 5.466e-05/0.002326, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 8.652e-05/0.002413, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 4.506e-05/0.002458, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 6.187e-05/0.00252, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 4.963e-05/0.00257, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 1.794e-05/0.002587, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 1.382e-05/0.002601, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 2.202e-05/0.002623, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 3.068e-05/0.002654, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 7.57e-05/0.00273, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 1.054e-05/0.00274, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 1.182e-06/0.002741, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 5.15e-06/0.002747, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 15 * Number of variables: 15 Notification: Performance of Generate backend data structure: time 0.0002739/0.00302, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 4.541e-05/0.003066, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 3.769e-05/0.003104, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.000115/0.003219, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.697e-05/0.003236, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 2.616e-05/0.003262, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001134/0.003375, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 8.516e-06/0.003384, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.862e-05/0.003402, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.008e-06/0.003406, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 6.961e-05/0.003476, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002373/0.003713, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 7.691e-05/0.00379, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 3.318e-05/0.003823, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 8.105e-06/0.003831, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001062/0.003938, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=12): time 2.034e-06/0.00394, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=13): time 0.0004944/0.004434, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 2.691e-05/0.004461, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 2.922e-05/0.00449, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 1.83e-05/0.004508, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 1.43e-05/0.004523, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 4.298e-05/0.004566, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 3.724e-05/0.004603, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 1.433e-05/0.004617, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 2.271e-05/0.00464, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 3.475e-05/0.004675, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 8.855e-05/0.004763, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.234e-06/0.004766, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=19) (initialization): time 0.0001134/0.004879, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 1.827e-05/0.004897, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.957e-06/0.004901, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 1.098e-05/0.004912, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 8.134e-05/0.004994, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.441e-06/0.004999, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 4.504e-05/0.005044, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.429e-05/0.005058, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 4 variables: central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 5 * Number of states: 0 () * Number of discrete variables: 8 ($PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.central.rising,central.rising,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (18): * Single equations (assignments): 17 * Array equations: 0 * Algorithm blocks: 1 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 9.052e-05/0.005149, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 1.65e-05/0.005165, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.67e-05/0.005192, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.535e-06/0.005195, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 5.4e-06/0.0052, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.126e-06/0.005203, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002516/0.005455, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.535e-06/0.005457, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 6.084e-05/0.005518, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 2.525e-06/0.005521, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.675e-05/0.005537, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.745e-06/0.00554, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.403e-06/0.005541, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001613/0.005703, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 2.288e-05/0.005726, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 6.068e-05/0.005786, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 6.734e-05/0.005854, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 3.755e-05/0.005891, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.24e-05/0.005904, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 1.175e-05/0.005915, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 1.232e-06/0.005917, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.0003637/0.00628, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 3 (central.C,central.AUC,elim.MExc) * Number of discrete variables: 5 ($whenCondition1,$whenCondition2,central.Cmax,central.Cmin,central.rising) * Number of discrete states: 5 (central.Cmin,$whenCondition2,central.Cmax,$whenCondition1,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (10): * Single equations (assignments): 9 * Array equations: 0 * Algorithm blocks: 1 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 8.99e-05/0.00637, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.0001516/0.006522, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 1.794e-06/0.006524, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 5.065e-05/0.006574, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003257/0.0069, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0006432/0.007543, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 2.761e-05/0.007571, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 2.852e-05/0.007599, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 8.946e-05/0.007689, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 1.831e-05/0.007707, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Templates: time 0.000691/0.008398, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 900] [Calling sys.exit(0), Time elapsed: 1.4496606858447194]