Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0002354/0.0002354, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0001886/0.0001886, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.1021/0.1021, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Drugs/ATC/B/B02BD15.mo:9:22-9:32:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 6000000000 into a real [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 0.7435/0.7435, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 179] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 1.673e-06/1.673e-06, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 2.674e-05/2.841e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites): time 0.004366/0.004395, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.001713/0.006108, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 0.0002107/0.006318, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 0.0002204/0.006539, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeBindings: time 0.0005181/0.007057, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeClassSections: time 0.0003226/0.007379, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 0.0004906/0.00787, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 0.0001984/0.008068, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 0.0004417/0.00851, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 0.0002431/0.008753, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 5.574e-05/0.008809, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 5.515e-05/0.008864, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 9.944e-05/0.008963, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 0.0001911/0.009154, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 0.0004171/0.009572, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 6.432e-05/0.009636, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 2.455e-06/0.009638, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 7.093e-06/0.009645, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 105 * Number of variables: 105 Notification: Performance of Generate backend data structure: time 0.00102/0.01067, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 7.487e-05/0.01074, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001129/0.01085, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002965/0.01115, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.238e-05/0.01121, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 7.888e-05/0.01129, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004838/0.01178, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 2.338e-05/0.0118, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.595e-05/0.01184, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.125e-05/0.01186, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002766/0.01213, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001062/0.01319, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.0003258/0.01352, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 0.0001235/0.01364, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 1.59e-05/0.01366, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003469/0.01401, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=74): time 5.47e-06/0.01401, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=79): time 0.00203/0.01604, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 8.305e-05/0.01612, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001397/0.01626, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 7.842e-05/0.01634, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 7.996e-05/0.01642, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 0.0001928/0.01661, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 0.000189/0.0168, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 5.983e-05/0.01686, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001594/0.01702, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002048/0.01723, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 0.0005708/0.0178, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.057e-06/0.01781, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=113) (initialization): time 0.0006208/0.01843, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 5.556e-05/0.01848, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.633e-05/0.0185, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 2.857e-05/0.01853, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004533/0.01898, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.142e-05/0.019, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002901/0.01929, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.008e-05/0.01935, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 22 variables: periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real acetaminophen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluconic_acid.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real sulfate_conjugates.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real NAPQI.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluthatione_conjugation.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real acetaminophen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real acetaminophen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.rising:DISCRETE(fixed = true protected = true ) type: Boolean NAPQI.rising:DISCRETE(fixed = true protected = true ) type: Boolean sulfate_conjugates.rising:DISCRETE(fixed = true protected = true ) type: Boolean gluconic_acid.rising:DISCRETE(fixed = true protected = true ) type: Boolean acetaminophen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 22 * Number of states: 0 () * Number of discrete variables: 45 ($PRE.acetaminophen.Cmin,acetaminophen.Cmin,$PRE.acetaminophen.Cmax,acetaminophen.Cmax,$PRE.gluconic_acid.Cmin,gluconic_acid.Cmin,$PRE.gluconic_acid.Cmax,gluconic_acid.Cmax,$PRE.sulfate_conjugates.Cmin,sulfate_conjugates.Cmin,$PRE.sulfate_conjugates.Cmax,sulfate_conjugates.Cmax,$PRE.NAPQI.Cmin,NAPQI.Cmin,$PRE.NAPQI.Cmax,NAPQI.Cmax,$PRE.gluthatione_conjugation.Cmin,gluthatione_conjugation.Cmin,$PRE.gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmax,$PRE.gluthatione_conjugation.rising,$PRE.NAPQI.rising,$PRE.sulfate_conjugates.rising,$PRE.gluconic_acid.rising,$PRE.acetaminophen.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,gluthatione_conjugation.rising,NAPQI.rising,sulfate_conjugates.rising,gluconic_acid.rising,acetaminophen.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (107): * Single equations (assignments): 101 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003997/0.01975, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 9.162e-05/0.01985, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.873e-05/0.01993, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.536e-06/0.01994, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 1.014e-05/0.01995, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.504e-06/0.01996, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001116/0.02108, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.54e-06/0.02108, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003862/0.02147, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 8.286e-06/0.02148, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.53e-05/0.02153, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.586e-06/0.02154, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.394e-06/0.02154, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0007623/0.0223, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 7.567e-05/0.02238, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001784/0.02256, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000214/0.02277, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001845/0.02296, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.078e-05/0.02301, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 6.578e-05/0.02307, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 5.881e-06/0.02308, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.0007349/0.02381, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 16 (periodicDose.TotalCumulativeMass,periodicDose.variableDose.TotalCumulativeMass,acetaminophen.C,acetaminophen.AUC,gluconic_acid.C,gluconic_acid.AUC,sulfate_conjugates.C,sulfate_conjugates.AUC,NAPQI.C,NAPQI.AUC,gluthatione_conjugation.C,gluthatione_conjugation.AUC,kidney.MExc,kidney1.MExc,kidney11.MExc,kidney2.MExc) * Number of discrete variables: 28 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,periodicDose.pulse.T_start,periodicDose.pulse.count,acetaminophen.Cmax,acetaminophen.Cmin,acetaminophen.rising,gluconic_acid.Cmax,gluconic_acid.Cmin,gluconic_acid.rising,sulfate_conjugates.Cmax,sulfate_conjugates.Cmin,sulfate_conjugates.rising,NAPQI.Cmax,NAPQI.Cmin,NAPQI.rising,gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmin,gluthatione_conjugation.rising) * Number of discrete states: 26 (periodicDose.pulse.count,NAPQI.Cmin,$whenCondition5,NAPQI.Cmax,$whenCondition4,NAPQI.rising,gluconic_acid.Cmin,$whenCondition9,gluconic_acid.Cmax,$whenCondition8,gluconic_acid.rising,sulfate_conjugates.Cmin,$whenCondition7,sulfate_conjugates.Cmax,$whenCondition6,sulfate_conjugates.rising,gluthatione_conjugation.Cmin,$whenCondition3,gluthatione_conjugation.Cmax,$whenCondition2,gluthatione_conjugation.rising,acetaminophen.Cmin,$whenCondition11,acetaminophen.Cmax,$whenCondition10,acetaminophen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (64): * Single equations (assignments): 57 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.00027/0.02408, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.0006277/0.02471, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 2.434e-06/0.02471, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 0.0003096/0.02502, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007314/0.02576, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001899/0.02765, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001141/0.02777, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 0.0001825/0.02795, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003556/0.02831, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 3.746e-05/0.02834, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Templates: time 0.00211/0.03045, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 900] [Calling sys.exit(0), Time elapsed: 1.520821867045015]