Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001483/0.001483, allocations: 85.91 kB / 19.87 MB, free: 4.625 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001487/0.001487, allocations: 169.7 kB / 23.27 MB, free: 1.23 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9331/0.9331, allocations: 177.1 MB / 203.7 MB, free: 5.512 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.635/1.635, allocations: 273.5 MB / 0.5212 GB, free: 14.71 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment")
translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.313e-06/1.313e-06, allocations: 0 / 0.6474 GB, free: 38.48 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.789e-05/1.921e-05, allocations: 2.312 kB / 0.6474 GB, free: 38.47 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.004466/0.004485, allocations: 6.579 MB / 0.6538 GB, free: 34.19 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.002445/0.00693, allocations: 1.993 MB / 0.6558 GB, free: 32.82 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002989/0.007229, allocations: 13.12 kB / 0.6558 GB, free: 32.82 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0005253/0.007754, allocations: 297.6 kB / 0.6561 GB, free: 32.67 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0004948/0.008249, allocations: 468.1 kB / 0.6565 GB, free: 32.35 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0007761/0.009025, allocations: 0.5364 MB / 0.657 GB, free: 32.01 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.00119/0.01022, allocations: 1.802 MB / 0.6588 GB, free: 31 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003085/0.01052, allocations: 259.4 kB / 0.659 GB, free: 30.85 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.000662/0.01119, allocations: 0.9095 MB / 0.6599 GB, free: 30.42 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0004414/0.01163, allocations: 0.5269 MB / 0.6605 GB, free: 30.21 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0001474/0.01177, allocations: 168 kB / 0.6606 GB, free: 30.21 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0003785/0.01215, allocations: 313.2 kB / 0.6609 GB, free: 30.16 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0001819/0.01233, allocations: 374 kB / 0.6613 GB, free: 29.93 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0003364/0.01267, allocations: 0.5169 MB / 0.6618 GB, free: 29.67 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0009371/0.01361, allocations: 1.386 MB / 0.6631 GB, free: 28.93 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.647e-06/0.01361, allocations: 0 / 0.6631 GB, free: 28.93 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 8.71e-07/0.01361, allocations: 0 / 0.6631 GB, free: 28.93 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 1.093e-05/0.01362, allocations: 0 / 0.6631 GB, free: 28.93 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 233
 * Number of variables: 233
Notification: Performance of Generate backend data structure: time 0.001587/0.01521, allocations: 2.35 MB / 0.6654 GB, free: 27.06 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.595e-05/0.01525, allocations: 9.906 kB / 0.6654 GB, free: 27.06 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006167/0.01586, allocations: 0.5222 MB / 0.6659 GB, free: 26.85 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005077/0.01637, allocations: 0.6546 MB / 0.6666 GB, free: 26.36 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.08e-05/0.01641, allocations: 71.34 kB / 0.6666 GB, free: 26.33 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001088/0.01652, allocations: 114.5 kB / 0.6668 GB, free: 26.29 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008429/0.01736, allocations: 1.208 MB / 0.6679 GB, free: 25.5 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.249e-05/0.0174, allocations: 16.16 kB / 0.668 GB, free: 25.48 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.018e-05/0.01745, allocations: 41.45 kB / 0.668 GB, free: 25.46 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.443e-05/0.01746, allocations: 19.88 kB / 0.668 GB, free: 25.46 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00055/0.01801, allocations: 0.863 MB / 0.6689 GB, free: 24.89 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001926/0.01994, allocations: 2.428 MB / 0.6712 GB, free: 23.29 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0008474/0.02078, allocations: 1.075 MB / 0.6723 GB, free: 22.49 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003486/0.02113, allocations: 0.7183 MB / 0.673 GB, free: 21.87 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 4.581e-05/0.02118, allocations: 21.38 kB / 0.673 GB, free: 21.87 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0008222/0.022, allocations: 1.585 MB / 0.6745 GB, free: 20.59 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=157): time 3.376e-06/0.022, allocations: 0 / 0.6745 GB, free: 20.59 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=165): time 0.004173/0.02618, allocations: 5.263 MB / 0.6797 GB, free: 16.67 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001691/0.02635, allocations: 1.036 MB / 0.6807 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000821/0.02717, allocations: 0.91 MB / 0.6816 GB, free: 15.02 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 7.708e-05/0.02724, allocations: 75.31 kB / 0.6817 GB, free: 14.96 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0003087/0.02755, allocations: 0.5865 MB / 0.6822 GB, free: 14.49 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0002593/0.02781, allocations: 0.5318 MB / 0.6827 GB, free: 14.06 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002923/0.0281, allocations: 293.6 kB / 0.683 GB, free: 13.92 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.909e-05/0.02815, allocations: 479.3 kB / 0.6835 GB, free: 13.45 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004444/0.0286, allocations: 0.8518 MB / 0.6843 GB, free: 12.73 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005735/0.02917, allocations: 1.342 MB / 0.6856 GB, free: 11.34 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001272/0.03044, allocations: 2.752 MB / 0.6883 GB, free: 8.75 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.156e-06/0.03045, allocations: 3.344 kB / 0.6883 GB, free: 8.75 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=229) (initialization): time 0.001899/0.03235, allocations: 2.57 MB / 0.6908 GB, free: 6.988 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0001369/0.03249, allocations: 0.5728 MB / 0.6914 GB, free: 6.336 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.525e-05/0.0325, allocations: 9.516 kB / 0.6914 GB, free: 6.336 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.64e-05/0.03253, allocations: 17.78 kB / 0.6914 GB, free: 6.336 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006764/0.03321, allocations: 342.9 kB / 0.6917 GB, free: 6.297 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.903e-05/0.03322, allocations: 22.62 kB / 0.6918 GB, free: 6.293 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005579/0.03378, allocations: 81.56 kB / 0.6918 GB, free: 6.27 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002475/0.03403, allocations: 233.9 kB / 0.6921 GB, free: 6.25 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 40 variables:
         patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 41
 * Number of states: 0 ()
 * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (209):
 * Single equations (assignments): 189
 * Array equations: 0
 * Algorithm blocks: 20
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0007763/0.03481, allocations: 0.9353 MB / 0.693 GB, free: 5.406 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0005147/0.03532, allocations: 450.3 kB / 0.6934 GB, free: 5.234 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001397/0.03546, allocations: 137.7 kB / 0.6935 GB, free: 5.145 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.338e-05/0.03547, allocations: 12.97 kB / 0.6935 GB, free: 5.145 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.172e-05/0.0355, allocations: 2.75 kB / 0.6936 GB, free: 5.145 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.305e-05/0.03551, allocations: 7.625 kB / 0.6936 GB, free: 5.145 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003353/0.03886, allocations: 3.583 MB / 0.6971 GB, free: 2.742 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.005e-06/0.03887, allocations: 1.281 kB / 0.6971 GB, free: 2.742 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007399/0.03961, allocations: 229.2 kB / 0.6973 GB, free: 2.723 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.188e-05/0.03962, allocations: 6.5 kB / 0.6973 GB, free: 2.723 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.402e-05/0.03972, allocations: 68.12 kB / 0.6973 GB, free: 2.684 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.074e-05/0.03973, allocations: 9.438 kB / 0.6974 GB, free: 2.68 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.256e-06/0.03973, allocations: 5.031 kB / 0.6974 GB, free: 2.676 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002497/0.04223, allocations: 3.752 MB / 0.701 GB, free: 14.64 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0004383/0.04266, allocations: 298.1 kB / 0.7013 GB, free: 14.35 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001592/0.04282, allocations: 71.98 kB / 0.7014 GB, free: 14.28 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003834/0.04321, allocations: 63.95 kB / 0.7014 GB, free: 14.21 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002208/0.04343, allocations: 151.7 kB / 0.7016 GB, free: 14.07 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001874/0.04362, allocations: 231.3 kB / 0.7018 GB, free: 13.84 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.0004781/0.04409, allocations: 0.5046 MB / 0.7023 GB, free: 13.33 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 1.8e-07/0.04409, allocations: 0 / 0.7023 GB, free: 13.33 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.001102/0.0452, allocations: 380 kB / 0.7027 GB, free: 12.96 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc)
 * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status)
 * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (133):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 16
 * Record equations: 0
 * When equations: 8
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.00035/0.04555, allocations: 304.7 kB / 0.703 GB, free: 12.66 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.001857/0.0474, allocations: 2.961 MB / 0.7058 GB, free: 9.238 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 3.517e-06/0.04741, allocations: 0 / 0.7058 GB, free: 9.238 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 0.0009663/0.04837, allocations: 1.812 MB / 0.7076 GB, free: 7.125 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001094/0.04947, allocations: 398 kB / 0.708 GB, free: 6.766 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004564/0.05403, allocations: 3.825 MB / 0.7117 GB, free: 2.879 MB / 0.5418 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002413/0.05427, allocations: 314.5 kB / 0.712 GB, free: 2.547 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 0.0004419/0.05471, allocations: 114.9 kB / 0.7121 GB, free: 2.438 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007849/0.0555, allocations: 0.5019 MB / 0.7126 GB, free: 1.934 MB / 0.5418 GB
Notification: Performance of SimCode: time 1.453e-06/0.0555, allocations: 0 / 0.7126 GB, free: 1.934 MB / 0.5418 GB
Notification: Performance of Templates: time 0.02699/0.08249, allocations: 25.48 MB / 0.7375 GB, free: 9.77 MB / 0.573 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.778400301001966]