Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009761/0.0009761, allocations: 82.05 kB / 19.87 MB, free: 4.617 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009683/0.0009683, allocations: 173.7 kB / 23.28 MB, free: 1.219 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9078/0.9078, allocations: 177.1 MB / 203.7 MB, free: 5.5 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.562/1.562, allocations: 273.5 MB / 0.5212 GB, free: 14.73 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI")
translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.843e-06/1.843e-06, allocations: 0 / 0.6474 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.074e-05/1.258e-05, allocations: 4.984 kB / 0.6474 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.004908/0.00492, allocations: 6.762 MB / 0.654 GB, free: 33.88 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001996/0.006917, allocations: 1.294 MB / 0.6553 GB, free: 32.98 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0003769/0.007294, allocations: 8.344 kB / 0.6553 GB, free: 32.98 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002271/0.007521, allocations: 114.7 kB / 0.6554 GB, free: 32.91 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0005286/0.008049, allocations: 344.4 kB / 0.6557 GB, free: 32.66 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0004912/0.008541, allocations: 286.8 kB / 0.656 GB, free: 32.47 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0008811/0.009422, allocations: 1.221 MB / 0.6572 GB, free: 31.78 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.000334/0.009756, allocations: 175.5 kB / 0.6573 GB, free: 31.67 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0007077/0.01046, allocations: 0.6206 MB / 0.6579 GB, free: 31.38 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0004176/0.01088, allocations: 362.3 kB / 0.6583 GB, free: 31.25 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0001077/0.01099, allocations: 110 kB / 0.6584 GB, free: 31.25 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001345/0.01112, allocations: 109.5 kB / 0.6585 GB, free: 31.25 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 9.007e-05/0.01121, allocations: 196.6 kB / 0.6587 GB, free: 31.11 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002597/0.01147, allocations: 367.2 kB / 0.659 GB, free: 30.94 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0005291/0.012, allocations: 0.7115 MB / 0.6597 GB, free: 30.55 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 4.378e-06/0.01201, allocations: 1.312 kB / 0.6597 GB, free: 30.55 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.052e-06/0.01201, allocations: 1.406 kB / 0.6597 GB, free: 30.55 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 9.127e-06/0.01202, allocations: 0 / 0.6597 GB, free: 30.55 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 144
 * Number of variables: 144
Notification: Performance of Generate backend data structure: time 0.001244/0.01326, allocations: 1.43 MB / 0.6611 GB, free: 29.43 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.358e-05/0.0133, allocations: 11.12 kB / 0.6611 GB, free: 29.43 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001474/0.01345, allocations: 145.1 kB / 0.6613 GB, free: 29.36 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003864/0.01384, allocations: 431.8 kB / 0.6617 GB, free: 29.03 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.746e-05/0.01388, allocations: 47.97 kB / 0.6617 GB, free: 29.01 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 7.886e-05/0.01395, allocations: 69.5 kB / 0.6618 GB, free: 28.98 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005622/0.01452, allocations: 0.6573 MB / 0.6624 GB, free: 28.57 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 2.458e-05/0.01454, allocations: 12.09 kB / 0.6625 GB, free: 28.57 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.381e-05/0.01457, allocations: 23 kB / 0.6625 GB, free: 28.55 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.167e-05/0.01459, allocations: 17.94 kB / 0.6625 GB, free: 28.55 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003546/0.01494, allocations: 438.9 kB / 0.6629 GB, free: 28.33 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001532/0.01647, allocations: 1.872 MB / 0.6647 GB, free: 26.92 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0005182/0.01699, allocations: 0.538 MB / 0.6653 GB, free: 26.57 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001799/0.01717, allocations: 310.6 kB / 0.6656 GB, free: 26.32 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 3.789e-05/0.01721, allocations: 31.64 kB / 0.6656 GB, free: 26.32 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005001/0.01771, allocations: 0.9313 MB / 0.6665 GB, free: 25.58 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 1.963e-06/0.01771, allocations: 0 / 0.6665 GB, free: 25.58 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.002173/0.01988, allocations: 2.575 MB / 0.669 GB, free: 23.79 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001267/0.02001, allocations: 0.5998 MB / 0.6696 GB, free: 23.09 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003071/0.02032, allocations: 0.5079 MB / 0.6701 GB, free: 22.81 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 4.788e-05/0.02037, allocations: 59.73 kB / 0.6702 GB, free: 22.76 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001362/0.0205, allocations: 349 kB / 0.6705 GB, free: 22.47 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001544/0.02066, allocations: 359.3 kB / 0.6708 GB, free: 22.19 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001818/0.02084, allocations: 199.1 kB / 0.671 GB, free: 22.09 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 0.0001168/0.02095, allocations: 0.5722 MB / 0.6716 GB, free: 21.55 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002391/0.02119, allocations: 425 kB / 0.672 GB, free: 21.22 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000324/0.02152, allocations: 0.8405 MB / 0.6728 GB, free: 20.33 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0007372/0.02225, allocations: 1.464 MB / 0.6742 GB, free: 18.95 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.063e-06/0.02226, allocations: 4.125 kB / 0.6742 GB, free: 18.95 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=159) (initialization): time 0.0008809/0.02314, allocations: 1.307 MB / 0.6755 GB, free: 18.1 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 6.261e-05/0.02321, allocations: 268.4 kB / 0.6758 GB, free: 17.81 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.083e-05/0.02322, allocations: 8.188 kB / 0.6758 GB, free: 17.81 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.957e-05/0.02324, allocations: 13.78 kB / 0.6758 GB, free: 17.81 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004511/0.02369, allocations: 254.3 kB / 0.676 GB, free: 17.79 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.322e-05/0.0237, allocations: 20.44 kB / 0.6761 GB, free: 17.78 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003083/0.02401, allocations: 58.33 kB / 0.6761 GB, free: 17.76 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.765e-05/0.02408, allocations: 42.47 kB / 0.6762 GB, free: 17.75 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_lower.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 36
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (150):
 * Single equations (assignments): 141
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0004641/0.02454, allocations: 0.5549 MB / 0.6767 GB, free: 17.28 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000115/0.02466, allocations: 137.9 kB / 0.6768 GB, free: 17.22 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.198e-05/0.02475, allocations: 80.34 kB / 0.6769 GB, free: 17.16 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.592e-06/0.02475, allocations: 8.984 kB / 0.6769 GB, free: 17.16 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.23e-05/0.02477, allocations: 1.5 kB / 0.6769 GB, free: 17.16 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.293e-05/0.02478, allocations: 5.641 kB / 0.6769 GB, free: 17.16 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00168/0.02646, allocations: 2.025 MB / 0.6789 GB, free: 15.84 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.743e-06/0.02647, allocations: 2.219 kB / 0.6789 GB, free: 15.84 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004769/0.02694, allocations: 163.6 kB / 0.6791 GB, free: 15.82 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 8.987e-06/0.02695, allocations: 11.66 kB / 0.6791 GB, free: 15.82 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.372e-05/0.02701, allocations: 37.03 kB / 0.6791 GB, free: 15.8 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.55e-06/0.02701, allocations: 4.219 kB / 0.6791 GB, free: 15.8 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.146e-06/0.02701, allocations: 0 / 0.6791 GB, free: 15.8 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001207/0.02822, allocations: 1.854 MB / 0.6809 GB, free: 14.56 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002285/0.02845, allocations: 164.2 kB / 0.6811 GB, free: 14.46 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000102/0.02855, allocations: 46.83 kB / 0.6811 GB, free: 14.44 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000263/0.02881, allocations: 48.62 kB / 0.6812 GB, free: 14.42 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001709/0.02899, allocations: 98.44 kB / 0.6813 GB, free: 14.39 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.592e-05/0.02903, allocations: 31.5 kB / 0.6813 GB, free: 14.39 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0002436/0.02927, allocations: 323.8 kB / 0.6816 GB, free: 14.23 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 3.31e-07/0.02927, allocations: 0 / 0.6816 GB, free: 14.23 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0005709/0.02985, allocations: 245.8 kB / 0.6818 GB, free: 14.2 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 3
 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count)
 * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001652/0.03001, allocations: 193.4 kB / 0.682 GB, free: 14.07 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0009275/0.03094, allocations: 1.434 MB / 0.6834 GB, free: 12.92 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 3.517e-06/0.03094, allocations: 0 / 0.6834 GB, free: 12.92 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0004264/0.03137, allocations: 0.7937 MB / 0.6842 GB, free: 12.27 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007885/0.03216, allocations: 281.4 kB / 0.6845 GB, free: 12.2 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002804/0.03496, allocations: 2.281 MB / 0.6867 GB, free: 10.71 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000146/0.03511, allocations: 172.8 kB / 0.6869 GB, free: 10.63 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.0003347/0.03544, allocations: 96.64 kB / 0.6869 GB, free: 10.61 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005762/0.03602, allocations: 373.4 kB / 0.6873 GB, free: 10.53 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.263e-06/0.03602, allocations: 1.125 kB / 0.6873 GB, free: 10.53 MB / 0.5262 GB
Notification: Performance of Templates: time 0.01899/0.05501, allocations: 15.48 MB / 0.7024 GB, free: 15.72 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.10142462188378]