Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009421/0.0009421, allocations: 82.05 kB / 19.87 MB, free: 4.621 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009418/0.0009418, allocations: 169.7 kB / 23.28 MB, free: 1.223 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9071/0.9071, allocations: 177.1 MB / 203.7 MB, free: 5.5 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.56/1.56, allocations: 273.5 MB / 0.5212 GB, free: 14.72 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.285e-06/2.285e-06, allocations: 1.625 kB / 0.6474 GB, free: 38.4 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.882e-05/2.11e-05, allocations: 2.312 kB / 0.6474 GB, free: 38.4 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.02321/0.02324, allocations: 10.88 MB / 0.658 GB, free: 31.11 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.007404/0.03064, allocations: 2.265 MB / 0.6602 GB, free: 29.49 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0004722/0.03111, allocations: 18.06 kB / 0.6603 GB, free: 29.48 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003229/0.03143, allocations: 223.1 kB / 0.6605 GB, free: 29.35 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0008889/0.03232, allocations: 0.6906 MB / 0.6611 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007204/0.03304, allocations: 0.6286 MB / 0.6618 GB, free: 28.38 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001598/0.03464, allocations: 2.681 MB / 0.6644 GB, free: 26.81 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0004602/0.0351, allocations: 361.8 kB / 0.6647 GB, free: 26.57 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001068/0.03617, allocations: 1.366 MB / 0.6661 GB, free: 25.88 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0007386/0.03691, allocations: 0.7353 MB / 0.6668 GB, free: 25.59 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002687/0.03718, allocations: 279.4 kB / 0.667 GB, free: 25.59 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000335/0.03751, allocations: 279.2 kB / 0.6673 GB, free: 25.59 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002103/0.03772, allocations: 457.1 kB / 0.6677 GB, free: 25.25 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0006199/0.03834, allocations: 0.7551 MB / 0.6685 GB, free: 24.86 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001122/0.03946, allocations: 1.593 MB / 0.67 GB, free: 23.92 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.484e-06/0.03947, allocations: 1.688 kB / 0.67 GB, free: 23.92 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.403e-06/0.03947, allocations: 1.438 kB / 0.67 GB, free: 23.92 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.192e-05/0.03948, allocations: 0 / 0.67 GB, free: 23.92 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002509/0.04199, allocations: 2.571 MB / 0.6725 GB, free: 21.99 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.91e-05/0.04203, allocations: 8.344 kB / 0.6726 GB, free: 21.99 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003228/0.04235, allocations: 284.4 kB / 0.6728 GB, free: 21.86 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008493/0.0432, allocations: 0.8216 MB / 0.6736 GB, free: 21.25 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.347e-05/0.04326, allocations: 86.36 kB / 0.6737 GB, free: 21.21 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001816/0.04344, allocations: 151.1 kB / 0.6739 GB, free: 21.16 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001415/0.04486, allocations: 1.273 MB / 0.6751 GB, free: 20.36 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.421e-05/0.04491, allocations: 21.95 kB / 0.6751 GB, free: 20.34 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.667e-05/0.045, allocations: 47.91 kB / 0.6752 GB, free: 20.31 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.169e-05/0.04502, allocations: 27.53 kB / 0.6752 GB, free: 20.31 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000952/0.04597, allocations: 0.861 MB / 0.676 GB, free: 19.86 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00356/0.04953, allocations: 4.064 MB / 0.68 GB, free: 16.85 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001222/0.05076, allocations: 1.083 MB / 0.6811 GB, free: 16.14 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004721/0.05123, allocations: 0.634 MB / 0.6817 GB, free: 15.64 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.21e-05/0.05129, allocations: 27.78 kB / 0.6817 GB, free: 15.64 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001428/0.05272, allocations: 1.867 MB / 0.6835 GB, free: 14.2 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 4.097e-06/0.05272, allocations: 0 / 0.6835 GB, free: 14.2 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.005125/0.05785, allocations: 5.18 MB / 0.6886 GB, free: 10.6 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002354/0.05808, allocations: 1.178 MB / 0.6897 GB, free: 9.215 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0009727/0.05906, allocations: 0.8629 MB / 0.6906 GB, free: 8.828 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001287/0.05918, allocations: 101.7 kB / 0.6907 GB, free: 8.754 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003625/0.05955, allocations: 0.577 MB / 0.6912 GB, free: 8.277 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.000434/0.05998, allocations: 0.6933 MB / 0.6919 GB, free: 7.719 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005323/0.06051, allocations: 382.6 kB / 0.6923 GB, free: 7.539 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 4.018e-05/0.06055, allocations: 482.5 kB / 0.6927 GB, free: 7.066 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007342/0.06129, allocations: 0.8309 MB / 0.6936 GB, free: 6.41 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008751/0.06216, allocations: 1.671 MB / 0.6952 GB, free: 4.523 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001947/0.06411, allocations: 2.944 MB / 0.6981 GB, free: 1.648 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.319e-05/0.06412, allocations: 8.562 kB / 0.6981 GB, free: 1.648 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.002483/0.06661, allocations: 2.585 MB / 0.7006 GB, free: 15.63 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.000222/0.06683, allocations: 0.5143 MB / 0.7011 GB, free: 15 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.173e-05/0.06685, allocations: 16 kB / 0.7011 GB, free: 14.99 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.388e-05/0.06688, allocations: 24 kB / 0.7011 GB, free: 14.96 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001263/0.06815, allocations: 0.4992 MB / 0.7016 GB, free: 14.46 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.275e-05/0.06818, allocations: 39.86 kB / 0.7017 GB, free: 14.43 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008708/0.06905, allocations: 120 kB / 0.7018 GB, free: 14.31 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001263/0.06918, allocations: 80 kB / 0.7018 GB, free: 14.23 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001007/0.07018, allocations: 1.005 MB / 0.7028 GB, free: 13.2 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003236/0.07051, allocations: 255 kB / 0.7031 GB, free: 12.95 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002109/0.07072, allocations: 157.6 kB / 0.7032 GB, free: 12.79 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.367e-05/0.07073, allocations: 20 kB / 0.7032 GB, free: 12.77 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.549e-05/0.07076, allocations: 4 kB / 0.7032 GB, free: 12.77 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.684e-05/0.07077, allocations: 11.97 kB / 0.7033 GB, free: 12.76 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004292/0.07507, allocations: 4.21 MB / 0.7074 GB, free: 8.359 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.891e-06/0.07507, allocations: 0 / 0.7074 GB, free: 8.359 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001038/0.07611, allocations: 323.6 kB / 0.7077 GB, free: 8.043 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.839e-06/0.07612, allocations: 4 kB / 0.7077 GB, free: 8.039 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001203/0.07624, allocations: 79.89 kB / 0.7078 GB, free: 7.961 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.608e-06/0.07625, allocations: 15.94 kB / 0.7078 GB, free: 7.945 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.907e-06/0.07625, allocations: 4 kB / 0.7078 GB, free: 7.941 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003124/0.07938, allocations: 3.672 MB / 0.7114 GB, free: 4.027 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005962/0.07997, allocations: 386.8 kB / 0.7117 GB, free: 3.648 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002632/0.08024, allocations: 107.9 kB / 0.7118 GB, free: 3.543 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006171/0.08085, allocations: 87.94 kB / 0.7119 GB, free: 3.457 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002428/0.0811, allocations: 203.6 kB / 0.7121 GB, free: 3.258 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.472e-05/0.08117, allocations: 71.89 kB / 0.7122 GB, free: 3.191 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.000418/0.08159, allocations: 0.502 MB / 0.7127 GB, free: 2.68 MB / 0.5418 GB Notification: Performance of sort global known variables: time 9.1e-08/0.08159, allocations: 0 / 0.7127 GB, free: 2.68 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.0009944/0.08258, allocations: 496 kB / 0.7131 GB, free: 2.195 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002594/0.08284, allocations: 308.7 kB / 0.7134 GB, free: 1.883 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.001741/0.08458, allocations: 2.888 MB / 0.7163 GB, free: 14.59 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 2.094e-06/0.08459, allocations: 0 / 0.7163 GB, free: 14.59 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.0008824/0.08547, allocations: 1.581 MB / 0.7178 GB, free: 12.79 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001476/0.08694, allocations: 0.5668 MB / 0.7184 GB, free: 12.27 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004789/0.09173, allocations: 4.461 MB / 0.7227 GB, free: 7.812 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002575/0.09199, allocations: 292.5 kB / 0.723 GB, free: 7.504 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0005845/0.09258, allocations: 187.4 kB / 0.7232 GB, free: 7.324 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001066/0.09364, allocations: 0.6736 MB / 0.7238 GB, free: 6.648 MB / 0.5574 GB Notification: Performance of SimCode: time 8.81e-07/0.09364, allocations: 0 / 0.7238 GB, free: 6.648 MB / 0.5574 GB Notification: Performance of Templates: time 0.03204/0.1257, allocations: 33.25 MB / 0.7563 GB, free: 7.016 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.21211428521201]