Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001573/0.001573, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001469/0.001469, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9407/0.9407, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.603/1.603, allocations: 273.5 MB / 0.5212 GB, free: 14.78 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites")
translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 3.556e-06/3.556e-06, allocations: 3.516 kB / 0.6476 GB, free: 38.52 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.11e-05/2.466e-05, allocations: 8.141 kB / 0.6476 GB, free: 38.51 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.004236/0.004261, allocations: 5.621 MB / 0.6531 GB, free: 34.81 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001825/0.006086, allocations: 1.304 MB / 0.6544 GB, free: 33.91 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002397/0.006326, allocations: 13.22 kB / 0.6544 GB, free: 33.9 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002048/0.006531, allocations: 126.2 kB / 0.6545 GB, free: 33.83 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.000461/0.006992, allocations: 367.5 kB / 0.6549 GB, free: 33.57 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003872/0.007379, allocations: 264.6 kB / 0.6551 GB, free: 33.39 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0009078/0.008287, allocations: 1.277 MB / 0.6564 GB, free: 32.68 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003277/0.008615, allocations: 211.8 kB / 0.6566 GB, free: 32.55 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0005964/0.009211, allocations: 0.652 MB / 0.6572 GB, free: 32.27 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003675/0.009578, allocations: 388 kB / 0.6576 GB, free: 32.15 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 9.888e-05/0.009677, allocations: 111.2 kB / 0.6577 GB, free: 32.14 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001263/0.009804, allocations: 109.8 kB / 0.6578 GB, free: 32.14 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 9.023e-05/0.009894, allocations: 213.5 kB / 0.658 GB, free: 31.99 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002559/0.01015, allocations: 380 kB / 0.6583 GB, free: 31.82 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0005077/0.01066, allocations: 0.7393 MB / 0.6591 GB, free: 31.44 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 5.209e-06/0.01066, allocations: 0 / 0.6591 GB, free: 31.44 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 9.42e-07/0.01066, allocations: 1.375 kB / 0.6591 GB, free: 31.44 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 7.794e-06/0.01067, allocations: 0 / 0.6591 GB, free: 31.44 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 165
 * Number of variables: 165
Notification: Performance of Generate backend data structure: time 0.001208/0.01188, allocations: 1.488 MB / 0.6605 GB, free: 30.29 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.548e-05/0.01192, allocations: 10.59 kB / 0.6605 GB, free: 30.29 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001794/0.0121, allocations: 158.8 kB / 0.6607 GB, free: 30.21 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004244/0.01253, allocations: 439 kB / 0.6611 GB, free: 29.88 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.73e-05/0.01259, allocations: 52.53 kB / 0.6612 GB, free: 29.86 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 9.785e-05/0.01268, allocations: 82.3 kB / 0.6612 GB, free: 29.84 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.000783/0.01347, allocations: 0.6791 MB / 0.6619 GB, free: 29.44 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.012e-05/0.0135, allocations: 10.67 kB / 0.6619 GB, free: 29.43 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.15e-05/0.01354, allocations: 28.44 kB / 0.6619 GB, free: 29.41 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.881e-05/0.01356, allocations: 17.25 kB / 0.6619 GB, free: 29.41 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004659/0.01402, allocations: 458.6 kB / 0.6624 GB, free: 29.19 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001715/0.01574, allocations: 1.882 MB / 0.6642 GB, free: 27.93 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003656/0.0161, allocations: 481 kB / 0.6647 GB, free: 27.65 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002048/0.01631, allocations: 314.6 kB / 0.665 GB, free: 27.43 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.672e-05/0.01634, allocations: 13.44 kB / 0.665 GB, free: 27.43 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.000541/0.01688, allocations: 0.8631 MB / 0.6658 GB, free: 26.74 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=99): time 2.244e-06/0.01688, allocations: 1.312 kB / 0.6658 GB, free: 26.74 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=105): time 0.001983/0.01886, allocations: 2.408 MB / 0.6682 GB, free: 25.21 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001027/0.01896, allocations: 0.5429 MB / 0.6687 GB, free: 24.57 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000304/0.01927, allocations: 0.4949 MB / 0.6692 GB, free: 24.3 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 4.303e-05/0.01931, allocations: 63.14 kB / 0.6693 GB, free: 24.25 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001487/0.01946, allocations: 372.7 kB / 0.6696 GB, free: 23.94 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001499/0.01961, allocations: 354.5 kB / 0.67 GB, free: 23.66 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001683/0.01978, allocations: 200.7 kB / 0.6702 GB, free: 23.55 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 0.0001142/0.01989, allocations: 0.5747 MB / 0.6707 GB, free: 23.02 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002827/0.02017, allocations: 428.9 kB / 0.6711 GB, free: 22.69 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004072/0.02058, allocations: 0.802 MB / 0.6719 GB, free: 21.85 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0008892/0.02147, allocations: 1.446 MB / 0.6733 GB, free: 20.5 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.6e-06/0.02148, allocations: 7.156 kB / 0.6733 GB, free: 20.5 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=157) (initialization): time 0.001096/0.02257, allocations: 1.286 MB / 0.6746 GB, free: 19.66 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 7.716e-05/0.02265, allocations: 265.9 kB / 0.6748 GB, free: 19.37 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.387e-05/0.02266, allocations: 7 kB / 0.6748 GB, free: 19.37 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.505e-05/0.02269, allocations: 12.72 kB / 0.6749 GB, free: 19.37 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006152/0.0233, allocations: 249.6 kB / 0.6751 GB, free: 19.35 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.468e-05/0.02332, allocations: 20.92 kB / 0.6751 GB, free: 19.34 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003783/0.0237, allocations: 54.59 kB / 0.6752 GB, free: 19.32 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.542e-05/0.02375, allocations: 38.69 kB / 0.6752 GB, free: 19.32 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_441524.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 32
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (148):
 * Single equations (assignments): 139
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.00042/0.02417, allocations: 0.5582 MB / 0.6757 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001287/0.0243, allocations: 120.2 kB / 0.6759 GB, free: 18.79 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001012/0.0244, allocations: 85.8 kB / 0.6759 GB, free: 18.73 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.554e-06/0.02441, allocations: 8.531 kB / 0.6759 GB, free: 18.73 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.28e-05/0.02442, allocations: 2.359 kB / 0.6759 GB, free: 18.73 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.969e-06/0.02443, allocations: 4.266 kB / 0.676 GB, free: 18.73 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001743/0.02618, allocations: 1.76 MB / 0.6777 GB, free: 17.68 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.236e-06/0.02618, allocations: 0 / 0.6777 GB, free: 17.68 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005243/0.0267, allocations: 163.5 kB / 0.6778 GB, free: 17.66 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 5.891e-06/0.02671, allocations: 4.312 kB / 0.6778 GB, free: 17.66 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.099e-05/0.02676, allocations: 35.5 kB / 0.6779 GB, free: 17.65 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.36e-06/0.02677, allocations: 6.719 kB / 0.6779 GB, free: 17.64 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.823e-06/0.02677, allocations: 3.875 kB / 0.6779 GB, free: 17.64 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001312/0.02808, allocations: 1.62 MB / 0.6795 GB, free: 16.64 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 7.978e-05/0.02816, allocations: 78.39 kB / 0.6795 GB, free: 16.58 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001087/0.02827, allocations: 43.41 kB / 0.6796 GB, free: 16.56 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002793/0.02855, allocations: 45.02 kB / 0.6796 GB, free: 16.55 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001473/0.02869, allocations: 84.81 kB / 0.6797 GB, free: 16.53 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.231e-05/0.02874, allocations: 31.11 kB / 0.6797 GB, free: 16.52 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.000214/0.02895, allocations: 321 kB / 0.68 GB, free: 16.36 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 8e-08/0.02895, allocations: 0 / 0.68 GB, free: 16.36 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0005848/0.02954, allocations: 255.9 kB / 0.6803 GB, free: 16.33 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC)
 * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising)
 * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001772/0.02971, allocations: 186.4 kB / 0.6805 GB, free: 16.21 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.000894/0.03061, allocations: 1.433 MB / 0.6819 GB, free: 15.06 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 2.034e-06/0.03061, allocations: 4.062 kB / 0.6819 GB, free: 15.06 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0005013/0.03111, allocations: 0.785 MB / 0.6826 GB, free: 14.42 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0009421/0.03205, allocations: 254.9 kB / 0.6829 GB, free: 14.36 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003894/0.03595, allocations: 2.343 MB / 0.6852 GB, free: 12.88 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001604/0.03611, allocations: 178.2 kB / 0.6853 GB, free: 12.8 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.0004106/0.03652, allocations: 87.48 kB / 0.6854 GB, free: 12.78 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006262/0.03714, allocations: 370.6 kB / 0.6858 GB, free: 12.7 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.342e-06/0.03714, allocations: 0 / 0.6858 GB, free: 12.7 MB / 0.5262 GB
Notification: Performance of Templates: time 0.01926/0.05641, allocations: 14.73 MB / 0.7001 GB, free: 2.25 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 6.997527522034943]