Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00118/0.00118, allocations: 82.05 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001398/0.001398, allocations: 170 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.963/0.963, allocations: 177.2 MB / 203.7 MB, free: 5.5 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.587/1.587, allocations: 273.5 MB / 0.5212 GB, free: 14.7 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 3.126e-06/3.126e-06, allocations: 0 / 0.6474 GB, free: 38.51 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.68e-05/2.993e-05, allocations: 6.906 kB / 0.6474 GB, free: 38.5 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.004948/0.004978, allocations: 1.294 MB / 0.6487 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0002125/0.005191, allocations: 58.12 kB / 0.6487 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 4.288e-05/0.005233, allocations: 1.438 kB / 0.6487 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 7.834e-05/0.005312, allocations: 3.938 kB / 0.6487 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.388e-05/0.005356, allocations: 3.531 kB / 0.6487 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001629/0.005519, allocations: 13.73 kB / 0.6487 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.000165/0.005684, allocations: 148 kB / 0.6489 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.365e-05/0.005727, allocations: 4.125 kB / 0.6489 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001187/0.005846, allocations: 75.45 kB / 0.649 GB, free: 37.55 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001386/0.005985, allocations: 85.55 kB / 0.649 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.651e-05/0.006011, allocations: 8.125 kB / 0.649 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.643e-05/0.006028, allocations: 8 kB / 0.649 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.403e-05/0.006062, allocations: 35.7 kB / 0.6491 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 3.743e-05/0.006099, allocations: 29.77 kB / 0.6491 GB, free: 37.51 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001131/0.006212, allocations: 92.55 kB / 0.6492 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.405e-06/0.006214, allocations: 0.9062 kB / 0.6492 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.824e-06/0.006216, allocations: 5.484 kB / 0.6492 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.088e-06/0.00622, allocations: 1.094 kB / 0.6492 GB, free: 37.48 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.000829/0.007049, allocations: 0.597 MB / 0.6498 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.658e-05/0.007086, allocations: 9.938 kB / 0.6498 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.472e-05/0.007121, allocations: 6.875 kB / 0.6498 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 9.654e-05/0.007217, allocations: 133.1 kB / 0.6499 GB, free: 36.95 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.698e-06/0.007227, allocations: 9.375 kB / 0.6499 GB, free: 36.95 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.25e-05/0.007239, allocations: 2.469 kB / 0.6499 GB, free: 36.95 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002428/0.007482, allocations: 154.9 kB / 0.6501 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 6.893e-06/0.007489, allocations: 192 / 0.6501 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.012e-05/0.007499, allocations: 384 / 0.6501 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.38e-06/0.007505, allocations: 2.75 kB / 0.6501 GB, free: 36.87 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 6.204e-05/0.007567, allocations: 31.77 kB / 0.6501 GB, free: 36.86 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001798/0.007747, allocations: 263.2 kB / 0.6504 GB, free: 36.59 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 5.643e-05/0.007803, allocations: 36.67 kB / 0.6504 GB, free: 36.56 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 5.183e-05/0.007855, allocations: 35.88 kB / 0.6504 GB, free: 36.54 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.354e-05/0.007868, allocations: 6.094 kB / 0.6505 GB, free: 36.54 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.536e-05/0.007884, allocations: 34.67 kB / 0.6505 GB, free: 36.5 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 9.92e-07/0.007885, allocations: 1.344 kB / 0.6505 GB, free: 36.5 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0002158/0.0081, allocations: 106.3 kB / 0.6506 GB, free: 36.45 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.645e-05/0.008117, allocations: 54.38 kB / 0.6506 GB, free: 36.38 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 5.129e-05/0.008168, allocations: 174.9 kB / 0.6508 GB, free: 36.21 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.018e-05/0.008178, allocations: 25.7 kB / 0.6508 GB, free: 36.18 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 3.482e-05/0.008213, allocations: 141.2 kB / 0.651 GB, free: 36.04 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.097e-05/0.008234, allocations: 38.61 kB / 0.651 GB, free: 36.01 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.203e-05/0.008286, allocations: 39.98 kB / 0.651 GB, free: 35.98 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.022e-05/0.008336, allocations: 499.1 kB / 0.6515 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.023e-05/0.008377, allocations: 7.812 kB / 0.6515 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 4.894e-05/0.008426, allocations: 44.98 kB / 0.6516 GB, free: 35.45 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 8.836e-05/0.008514, allocations: 49.91 kB / 0.6516 GB, free: 35.42 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.663e-06/0.008516, allocations: 1.438 kB / 0.6516 GB, free: 35.42 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001392/0.008655, allocations: 83.73 kB / 0.6517 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.115e-05/0.008666, allocations: 7.125 kB / 0.6517 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.37e-06/0.008671, allocations: 0 / 0.6517 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.252e-05/0.008684, allocations: 5.625 kB / 0.6517 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002062/0.00889, allocations: 76.28 kB / 0.6518 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.725e-06/0.008893, allocations: 4.219 kB / 0.6518 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001339/0.009027, allocations: 54.44 kB / 0.6518 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.21e-05/0.009039, allocations: 8.219 kB / 0.6518 GB, free: 35.37 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 6.064e-05/0.009099, allocations: 167 kB / 0.652 GB, free: 35.2 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.769e-05/0.009117, allocations: 8.609 kB / 0.652 GB, free: 35.2 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002591/0.009376, allocations: 170.3 kB / 0.6522 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.866e-06/0.009379, allocations: 4.406 kB / 0.6522 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.655e-06/0.009382, allocations: 3.938 kB / 0.6522 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.168e-06/0.009386, allocations: 4.578 kB / 0.6522 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 9.841e-05/0.009484, allocations: 131.8 kB / 0.6523 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.353e-06/0.009486, allocations: 1.469 kB / 0.6523 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001919/0.009678, allocations: 91.12 kB / 0.6524 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 3.577e-06/0.009681, allocations: 1.844 kB / 0.6524 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.618e-06/0.009691, allocations: 4.375 kB / 0.6524 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.333e-06/0.009692, allocations: 0 / 0.6524 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.71e-07/0.009693, allocations: 2.219 kB / 0.6524 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001573/0.00985, allocations: 168.3 kB / 0.6526 GB, free: 34.85 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.252e-05/0.009863, allocations: 12.42 kB / 0.6526 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.433e-05/0.009877, allocations: 6.156 kB / 0.6526 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001323/0.01001, allocations: 53.91 kB / 0.6526 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 5.411e-05/0.01006, allocations: 24.62 kB / 0.6527 GB, free: 34.83 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.949e-06/0.01007, allocations: 13.42 kB / 0.6527 GB, free: 34.82 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.416e-05/0.0101, allocations: 126.7 kB / 0.6528 GB, free: 34.7 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 4e-08/0.0101, allocations: 0 / 0.6528 GB, free: 34.7 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001518/0.01025, allocations: 29.16 kB / 0.6528 GB, free: 34.7 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 8.122e-05/0.01033, allocations: 102.3 kB / 0.6529 GB, free: 34.61 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001473/0.01048, allocations: 68.86 kB / 0.653 GB, free: 34.59 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 2.365e-06/0.01048, allocations: 0 / 0.653 GB, free: 34.59 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 6.803e-05/0.01055, allocations: 57.75 kB / 0.653 GB, free: 34.57 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001564/0.0107, allocations: 26.06 kB / 0.6531 GB, free: 34.56 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0004817/0.01119, allocations: 239.3 kB / 0.6533 GB, free: 34.39 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.767e-05/0.01121, allocations: 65.94 kB / 0.6534 GB, free: 34.32 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 5.987e-05/0.01127, allocations: 23.14 kB / 0.6534 GB, free: 34.31 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001225/0.0114, allocations: 92.41 kB / 0.6535 GB, free: 34.24 MB / 0.5262 GB
Notification: Performance of SimCode: time 8.42e-07/0.0114, allocations: 3.938 kB / 0.6535 GB, free: 34.24 MB / 0.5262 GB
Notification: Performance of Templates: time 0.004513/0.01591, allocations: 2.971 MB / 0.6564 GB, free: 34.02 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.740617236122489]