Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001334/0.001334, allocations: 81.17 kB / 19.87 MB, free: 4.617 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001021/0.001021, allocations: 169 kB / 23.28 MB, free: 1.219 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.014/1.014, allocations: 177.1 MB / 203.7 MB, free: 5.496 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.647/1.647, allocations: 273.5 MB / 0.5212 GB, free: 14.63 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.154e-06/2.154e-06, allocations: 0 / 0.6474 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.514e-05/2.729e-05, allocations: 3.281 kB / 0.6474 GB, free: 38.45 MB / 0.5262 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.1027/0.1027, allocations: 43.97 MB / 0.6903 GB, free: 14.08 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.005934/0.1087, allocations: 5.057 MB / 0.6953 GB, free: 9.012 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002274/0.1089, allocations: 23.75 kB / 0.6953 GB, free: 8.988 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002022/0.1091, allocations: 59.34 kB / 0.6954 GB, free: 8.93 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001941/0.111, allocations: 0.7729 MB / 0.6961 GB, free: 8.156 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001799/0.1128, allocations: 0.844 MB / 0.6969 GB, free: 7.316 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0005631/0.1134, allocations: 0.5053 MB / 0.6974 GB, free: 6.809 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002472/0.1137, allocations: 184.2 kB / 0.6976 GB, free: 6.629 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002693/0.1139, allocations: 255.3 kB / 0.6978 GB, free: 6.379 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001902/0.1141, allocations: 135.5 kB / 0.698 GB, free: 6.246 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 4.093e-05/0.1142, allocations: 28 kB / 0.698 GB, free: 6.219 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 5.107e-05/0.1142, allocations: 28 kB / 0.698 GB, free: 6.191 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 6.047e-05/0.1143, allocations: 79.61 kB / 0.6981 GB, free: 6.113 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001047/0.1144, allocations: 131.6 kB / 0.6982 GB, free: 5.984 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0003337/0.1147, allocations: 330.7 kB / 0.6985 GB, free: 5.66 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.745e-06/0.1147, allocations: 0 / 0.6985 GB, free: 5.66 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.032e-06/0.1147, allocations: 0 / 0.6985 GB, free: 5.66 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 6.943e-06/0.1147, allocations: 0 / 0.6985 GB, free: 5.66 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0005958/0.1153, allocations: 0.729 MB / 0.6993 GB, free: 4.895 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 2.823e-05/0.1153, allocations: 12.03 kB / 0.6993 GB, free: 4.883 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.948e-05/0.1154, allocations: 64.66 kB / 0.6993 GB, free: 4.82 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004052/0.1158, allocations: 361 kB / 0.6997 GB, free: 4.441 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.22e-05/0.1158, allocations: 20.88 kB / 0.6997 GB, free: 4.422 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.66e-05/0.1159, allocations: 32.38 kB / 0.6997 GB, free: 4.391 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002096/0.1161, allocations: 153.4 kB / 0.6999 GB, free: 4.234 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.238e-05/0.1161, allocations: 3.938 kB / 0.6999 GB, free: 4.23 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.535e-05/0.1161, allocations: 8 kB / 0.6999 GB, free: 4.223 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.933e-06/0.1161, allocations: 8 kB / 0.6999 GB, free: 4.215 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001211/0.1162, allocations: 67.42 kB / 0.7 GB, free: 4.152 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0008425/0.1171, allocations: 0.6422 MB / 0.7006 GB, free: 3.48 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001512/0.1172, allocations: 110.9 kB / 0.7007 GB, free: 3.359 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 6.354e-05/0.1173, allocations: 51.59 kB / 0.7007 GB, free: 3.305 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.672e-05/0.1173, allocations: 4 kB / 0.7007 GB, free: 3.301 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.323e-05/0.1173, allocations: 41.39 kB / 0.7008 GB, free: 3.25 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.292e-06/0.1173, allocations: 0 / 0.7008 GB, free: 3.25 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=20): time 0.0002315/0.1176, allocations: 180.2 kB / 0.701 GB, free: 3.07 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.413e-05/0.1176, allocations: 55.41 kB / 0.701 GB, free: 3.004 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002265/0.1178, allocations: 382.4 kB / 0.7014 GB, free: 2.617 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.445e-05/0.1178, allocations: 29.7 kB / 0.7014 GB, free: 2.582 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 9.632e-05/0.1179, allocations: 267.2 kB / 0.7017 GB, free: 2.312 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 4.045e-05/0.1179, allocations: 79.33 kB / 0.7017 GB, free: 2.234 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.788e-05/0.118, allocations: 75.3 kB / 0.7018 GB, free: 2.152 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 8.552e-05/0.1181, allocations: 0.5156 MB / 0.7023 GB, free: 1.625 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 6.003e-05/0.1182, allocations: 31.97 kB / 0.7023 GB, free: 1.594 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 9.906e-05/0.1183, allocations: 123 kB / 0.7025 GB, free: 1.445 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002627/0.1185, allocations: 224.8 kB / 0.7027 GB, free: 1.195 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.935e-06/0.1185, allocations: 0 / 0.7027 GB, free: 1.195 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.0002637/0.1188, allocations: 238.8 kB / 0.7029 GB, free: 0.9609 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.25e-05/0.1188, allocations: 8 kB / 0.7029 GB, free: 0.9531 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.118e-06/0.1188, allocations: 0 / 0.7029 GB, free: 0.9531 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 9.248e-06/0.1188, allocations: 7.938 kB / 0.7029 GB, free: 0.9453 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002105/0.119, allocations: 63.91 kB / 0.703 GB, free: 0.8828 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.06e-06/0.119, allocations: 7.938 kB / 0.703 GB, free: 0.875 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001038/0.1191, allocations: 31.78 kB / 0.703 GB, free: 0.8438 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.221e-05/0.1192, allocations: 8 kB / 0.703 GB, free: 0.8359 MB / 0.5262 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 8.675e-05/0.1192, allocations: 176.4 kB / 0.7032 GB, free: 0.6523 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.921e-05/0.1193, allocations: 43.77 kB / 0.7032 GB, free: 0.6094 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001864/0.1195, allocations: 153 kB / 0.7034 GB, free: 464 kB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.817e-06/0.1195, allocations: 7.938 kB / 0.7034 GB, free: 456 kB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.302e-06/0.1195, allocations: 0 / 0.7034 GB, free: 456 kB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.416e-06/0.1195, allocations: 0 / 0.7034 GB, free: 456 kB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000233/0.1197, allocations: 209 kB / 0.7036 GB, free: 220 kB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.713e-06/0.1197, allocations: 0 / 0.7036 GB, free: 220 kB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000145/0.1199, allocations: 35.92 kB / 0.7036 GB, free: 184 kB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.485e-06/0.1199, allocations: 3.938 kB / 0.7036 GB, free: 180 kB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.131e-05/0.1199, allocations: 4 kB / 0.7036 GB, free: 176 kB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.485e-06/0.1199, allocations: 4 kB / 0.7036 GB, free: 172 kB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.102e-06/0.1199, allocations: 4 kB / 0.7036 GB, free: 168 kB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003056/0.1202, allocations: 336.4 kB / 0.704 GB, free: 15.82 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 8.645e-05/0.1203, allocations: 51.67 kB / 0.704 GB, free: 15.77 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.485e-05/0.1203, allocations: 0 / 0.704 GB, free: 15.77 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000102/0.1204, allocations: 11.94 kB / 0.704 GB, free: 15.75 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 3.275e-05/0.1204, allocations: 15.91 kB / 0.704 GB, free: 15.74 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.787e-06/0.1204, allocations: 4 kB / 0.704 GB, free: 15.73 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.0001638/0.1206, allocations: 239 kB / 0.7043 GB, free: 15.5 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 1e-07/0.1206, allocations: 4 kB / 0.7043 GB, free: 15.5 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.0003402/0.1209, allocations: 83.84 kB / 0.7043 GB, free: 15.41 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 8.625e-05/0.121, allocations: 103.2 kB / 0.7044 GB, free: 15.3 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.0002271/0.1213, allocations: 130.7 kB / 0.7046 GB, free: 15.17 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 1.102e-06/0.1213, allocations: 0 / 0.7046 GB, free: 15.17 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 7.958e-05/0.1213, allocations: 63.58 kB / 0.7046 GB, free: 15.11 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004119/0.1218, allocations: 77.83 kB / 0.7047 GB, free: 15.03 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001091/0.1228, allocations: 0.6017 MB / 0.7053 GB, free: 14.4 MB / 0.5418 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 8.478e-05/0.1229, allocations: 96.62 kB / 0.7054 GB, free: 14.29 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 0.0001142/0.123, allocations: 38.44 kB / 0.7054 GB, free: 14.26 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001815/0.1232, allocations: 142.2 kB / 0.7056 GB, free: 14.12 MB / 0.5418 GB
Notification: Performance of SimCode: time 4.41e-07/0.1232, allocations: 0 / 0.7056 GB, free: 14.12 MB / 0.5418 GB
Notification: Performance of Templates: time 0.007199/0.1304, allocations: 3.664 MB / 0.7091 GB, free: 10.71 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.948678041808307]