Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001393/0.001393, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001033/0.001033, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9489/0.9489, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.657/1.657, allocations: 273.5 MB / 0.5212 GB, free: 14.69 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.773e-06/1.773e-06, allocations: 0 / 0.6474 GB, free: 38.7 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.093e-05/1.27e-05, allocations: 2.312 kB / 0.6474 GB, free: 38.69 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.0008625/0.0008752, allocations: 0.5243 MB / 0.6479 GB, free: 38.41 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001196/0.0009949, allocations: 26.48 kB / 0.6479 GB, free: 38.4 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.504e-05/0.00102, allocations: 0 / 0.6479 GB, free: 38.4 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 1.377e-05/0.001034, allocations: 5.219 kB / 0.6479 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 3.759e-05/0.001071, allocations: 1.422 kB / 0.6479 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 7.973e-05/0.001151, allocations: 3.984 kB / 0.6479 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 4.13e-05/0.001192, allocations: 21.2 kB / 0.648 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.247e-05/0.001225, allocations: 6.125 kB / 0.648 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 3.821e-05/0.001263, allocations: 7.453 kB / 0.648 GB, free: 38.39 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 5.87e-05/0.001322, allocations: 11.05 kB / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 1.293e-05/0.001335, allocations: 0 / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 6.863e-06/0.001341, allocations: 3.188 kB / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 1.468e-05/0.001356, allocations: 12.16 kB / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 1.621e-05/0.001372, allocations: 5.188 kB / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 5.003e-05/0.001422, allocations: 10.64 kB / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.244e-06/0.001425, allocations: 2.562 kB / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 4.01e-07/0.001425, allocations: 0 / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 2.604e-06/0.001428, allocations: 0 / 0.648 GB, free: 38.38 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.0002289/0.001657, allocations: 362.7 kB / 0.6484 GB, free: 38 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.275e-05/0.001689, allocations: 9.562 kB / 0.6484 GB, free: 38 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 2.241e-05/0.001712, allocations: 4.156 kB / 0.6484 GB, free: 38 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 4.685e-05/0.001759, allocations: 120.3 kB / 0.6485 GB, free: 37.86 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.027e-06/0.001768, allocations: 384 / 0.6485 GB, free: 37.86 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.327e-05/0.001781, allocations: 8.078 kB / 0.6485 GB, free: 37.86 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 5.247e-05/0.001833, allocations: 40.67 kB / 0.6485 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 5.741e-06/0.001839, allocations: 1.625 kB / 0.6485 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.558e-06/0.001844, allocations: 384 / 0.6485 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.449e-06/0.001848, allocations: 2.938 kB / 0.6485 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 9.939e-06/0.001858, allocations: 12.25 kB / 0.6486 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 7.409e-05/0.001932, allocations: 100.6 kB / 0.6487 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001729/0.002105, allocations: 57.58 kB / 0.6487 GB, free: 37.66 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 1.113e-05/0.002116, allocations: 14.47 kB / 0.6487 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 6.181e-06/0.002122, allocations: 2.375 kB / 0.6487 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.144e-05/0.002134, allocations: 34.98 kB / 0.6488 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=3): time 6.61e-07/0.002134, allocations: 1.562 kB / 0.6488 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=3): time 8.424e-05/0.002219, allocations: 56.48 kB / 0.6488 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.304e-05/0.002232, allocations: 51.41 kB / 0.6489 GB, free: 37.51 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 3.078e-05/0.002262, allocations: 170.4 kB / 0.649 GB, free: 37.34 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 7.424e-06/0.00227, allocations: 25.7 kB / 0.649 GB, free: 37.31 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 1.39e-05/0.002284, allocations: 140.8 kB / 0.6492 GB, free: 37.17 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.018e-05/0.002304, allocations: 7.906 kB / 0.6492 GB, free: 37.16 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 2.121e-05/0.002325, allocations: 21.12 kB / 0.6492 GB, free: 37.14 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.67e-05/0.002372, allocations: 0.4915 MB / 0.6497 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 8.015e-06/0.00238, allocations: 4.562 kB / 0.6497 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 1.03e-05/0.00239, allocations: 2.312 kB / 0.6497 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 4.436e-05/0.002434, allocations: 38.33 kB / 0.6497 GB, free: 36.62 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.302e-06/0.002436, allocations: 1.5 kB / 0.6497 GB, free: 36.62 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 4.607e-05/0.002482, allocations: 55.92 kB / 0.6498 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.022e-05/0.002492, allocations: 5.875 kB / 0.6498 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.297e-06/0.002495, allocations: 1.438 kB / 0.6498 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.122e-05/0.002507, allocations: 0 / 0.6498 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 3.314e-05/0.00254, allocations: 9.531 kB / 0.6498 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.206e-06/0.002543, allocations: 0 / 0.6498 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.185e-05/0.002555, allocations: 7.281 kB / 0.6498 GB, free: 36.57 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.658e-06/0.002559, allocations: 3.938 kB / 0.6498 GB, free: 36.57 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.401e-05/0.002633, allocations: 173.3 kB / 0.65 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.64e-06/0.002639, allocations: 1.75 kB / 0.65 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.927e-05/0.002658, allocations: 6.906 kB / 0.65 GB, free: 36.39 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.092e-06/0.002659, allocations: 0 / 0.65 GB, free: 36.39 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.856e-06/0.002662, allocations: 5.906 kB / 0.65 GB, free: 36.39 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.775e-06/0.002665, allocations: 0 / 0.65 GB, free: 36.39 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 4.348e-05/0.002709, allocations: 109.9 kB / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.21e-07/0.002709, allocations: 0 / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 3.159e-05/0.002741, allocations: 7.094 kB / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.51e-07/0.002741, allocations: 1.562 kB / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.935e-06/0.002749, allocations: 0 / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.11e-07/0.00275, allocations: 3.719 kB / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.71e-07/0.00275, allocations: 0 / 0.6501 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 7.909e-05/0.002829, allocations: 101.7 kB / 0.6502 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 5.029e-06/0.002834, allocations: 0 / 0.6502 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.035e-06/0.002842, allocations: 3.938 kB / 0.6502 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 9.227e-06/0.002852, allocations: 0 / 0.6502 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.949e-06/0.002861, allocations: 5.25 kB / 0.6502 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.954e-06/0.002863, allocations: 3.469 kB / 0.6502 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 1.75e-05/0.002881, allocations: 123.2 kB / 0.6503 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 7e-08/0.002881, allocations: 2.281 kB / 0.6503 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001089/0.00299, allocations: 5.312 kB / 0.6503 GB, free: 36.05 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 3 (V,I,T)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3):
 * Single equations (assignments): 3
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 5.461e-05/0.003045, allocations: 95.59 kB / 0.6504 GB, free: 35.96 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 5.952e-05/0.003104, allocations: 32.83 kB / 0.6505 GB, free: 35.95 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.583e-06/0.003106, allocations: 1.094 kB / 0.6505 GB, free: 35.95 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 1.257e-05/0.003118, allocations: 23.56 kB / 0.6505 GB, free: 35.93 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 9.679e-05/0.003215, allocations: 8.281 kB / 0.6505 GB, free: 35.93 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0001599/0.003375, allocations: 144.6 kB / 0.6506 GB, free: 35.79 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 1.645e-05/0.003391, allocations: 62.81 kB / 0.6507 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 1.095e-05/0.003402, allocations: 3.859 kB / 0.6507 GB, free: 35.71 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 2.448e-05/0.003427, allocations: 69.05 kB / 0.6508 GB, free: 35.64 MB / 0.5262 GB
Notification: Performance of SimCode: time 3.71e-07/0.003427, allocations: 1.312 kB / 0.6508 GB, free: 35.64 MB / 0.5262 GB
Notification: Performance of Templates: time 0.001486/0.004913, allocations: 380.6 kB / 0.6511 GB, free: 35.61 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.461111010983586]