Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008877/0.0008877, allocations: 85.27 kB / 19.87 MB, free: 4.617 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009986/0.0009986, allocations: 165 kB / 23.27 MB, free: 1.219 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9654/0.9654, allocations: 177.1 MB / 203.7 MB, free: 5.508 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09507/0.09507, allocations: 17.47 MB / 277.7 MB, free: 11.4 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.784e-06/1.784e-06, allocations: 0 / 354 MB, free: 10.61 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.392e-05/2.57e-05, allocations: 5.266 kB / 354 MB, free: 10.6 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02645/0.02648, allocations: 26.93 MB / 380.9 MB, free: 15.77 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005434/0.03191, allocations: 6.199 MB / 387.1 MB, free: 9.551 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0003218/0.03223, allocations: 11.88 kB / 387.2 MB, free: 9.539 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004767/0.03271, allocations: 138.8 kB / 387.3 MB, free: 9.402 MB / 362.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0006359/0.03334, allocations: 273.8 kB / 387.6 MB, free: 9.133 MB / 362.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001908/0.03525, allocations: 1.013 MB / 388.6 MB, free: 8.113 MB / 362.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005595/0.03581, allocations: 0.5253 MB / 389.1 MB, free: 7.586 MB / 362.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002697/0.03608, allocations: 169 kB / 389.3 MB, free: 7.418 MB / 362.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002782/0.03636, allocations: 315.4 kB / 389.6 MB, free: 7.109 MB / 362.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003055/0.03667, allocations: 243.4 kB / 389.8 MB, free: 6.871 MB / 362.7 MB
Notification: Performance of NFPackage.collectConstants: time 5.291e-05/0.03672, allocations: 28 kB / 389.8 MB, free: 6.844 MB / 362.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.001006/0.03772, allocations: 0.5185 MB / 390.4 MB, free: 6.324 MB / 362.7 MB
Notification: Performance of NFScalarize.scalarize: time 9.596e-05/0.03782, allocations: 99.58 kB / 390.5 MB, free: 6.227 MB / 362.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001056/0.03793, allocations: 139.7 kB / 390.6 MB, free: 6.09 MB / 362.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001262/0.03919, allocations: 1.039 MB / 391.6 MB, free: 5.047 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.138e-06/0.03919, allocations: 0 / 391.6 MB, free: 5.047 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.233e-06/0.03919, allocations: 0 / 391.6 MB, free: 5.047 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 6.533e-06/0.0392, allocations: 0 / 391.6 MB, free: 5.047 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.001307/0.04051, allocations: 0.8376 MB / 392.5 MB, free: 4.168 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.808e-05/0.04055, allocations: 12.03 kB / 392.5 MB, free: 4.156 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004122/0.04097, allocations: 175.9 kB / 392.6 MB, free: 3.984 MB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003522/0.04132, allocations: 340.3 kB / 393 MB, free: 3.625 MB / 362.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.817e-05/0.04134, allocations: 21.03 kB / 393 MB, free: 3.605 MB / 362.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.092e-05/0.04137, allocations: 24.38 kB / 393 MB, free: 3.582 MB / 362.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003418/0.04171, allocations: 372.3 kB / 393.4 MB, free: 3.168 MB / 362.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.171e-05/0.04172, allocations: 7.938 kB / 393.4 MB, free: 3.16 MB / 362.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.264e-05/0.04174, allocations: 8 kB / 393.4 MB, free: 3.152 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.326e-06/0.04175, allocations: 8 kB / 393.4 MB, free: 3.145 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003521/0.0421, allocations: 381 kB / 393.8 MB, free: 2.777 MB / 362.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001419/0.04352, allocations: 2.031 MB / 395.8 MB, free: 0.6602 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001584/0.04368, allocations: 94.89 kB / 395.9 MB, free: 0.5547 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 5.568e-05/0.04374, allocations: 43.66 kB / 396 MB, free: 0.5078 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001079/0.04482, allocations: 1.005 MB / 397 MB, free: 15.49 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.26e-05/0.04484, allocations: 41.39 kB / 397 MB, free: 15.44 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.232e-06/0.04484, allocations: 0 / 397 MB, free: 15.44 MB / 378.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0002047/0.04505, allocations: 125.4 kB / 397.1 MB, free: 15.31 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.824e-05/0.04507, allocations: 55.41 kB / 397.2 MB, free: 15.24 MB / 378.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002576/0.04533, allocations: 426.2 kB / 397.6 MB, free: 14.81 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.689e-05/0.04535, allocations: 37.7 kB / 397.6 MB, free: 14.77 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001545/0.0455, allocations: 322.3 kB / 397.9 MB, free: 14.45 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.308e-05/0.04553, allocations: 43.67 kB / 398 MB, free: 14.4 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.598e-05/0.0456, allocations: 87.03 kB / 398.1 MB, free: 14.31 MB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.00015/0.04575, allocations: 0.5275 MB / 398.6 MB, free: 13.77 MB / 378.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.904e-05/0.04579, allocations: 31.91 kB / 398.6 MB, free: 13.74 MB / 378.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000184/0.04598, allocations: 345.2 kB / 399 MB, free: 13.25 MB / 378.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0005114/0.04649, allocations: 428.5 kB / 399.4 MB, free: 12.69 MB / 378.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.226e-06/0.04649, allocations: 0 / 399.4 MB, free: 12.69 MB / 378.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0002931/0.04678, allocations: 309.6 kB / 399.7 MB, free: 12.38 MB / 378.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.812e-05/0.0468, allocations: 11.98 kB / 399.7 MB, free: 12.37 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.496e-06/0.04681, allocations: 12.12 kB / 399.7 MB, free: 12.36 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.674e-05/0.04683, allocations: 12 kB / 399.7 MB, free: 12.34 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001384/0.04696, allocations: 83.84 kB / 399.8 MB, free: 12.26 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.094e-05/0.04698, allocations: 19.92 kB / 399.8 MB, free: 12.24 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001139/0.04709, allocations: 39.67 kB / 399.9 MB, free: 12.2 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.462e-05/0.04711, allocations: 24 kB / 399.9 MB, free: 12.18 MB / 378.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.106e-05/0.04721, allocations: 184.3 kB / 400.1 MB, free: 11.99 MB / 378.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.628e-05/0.04724, allocations: 35.81 kB / 400.1 MB, free: 11.95 MB / 378.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000282/0.04752, allocations: 249.8 kB / 400.3 MB, free: 11.68 MB / 378.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.054e-06/0.04753, allocations: 0 / 400.3 MB, free: 11.68 MB / 378.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.284e-06/0.04753, allocations: 3.984 kB / 400.3 MB, free: 11.67 MB / 378.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.416e-06/0.04753, allocations: 0 / 400.3 MB, free: 11.67 MB / 378.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002765/0.04781, allocations: 0.4889 MB / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.264e-06/0.04781, allocations: 0 / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 1.043e-05/0.04782, allocations: 4.062 kB / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 3.005e-06/0.04782, allocations: 4 kB / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.497e-06/0.04783, allocations: 0 / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.72e-07/0.04783, allocations: 0 / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.473e-06/0.04783, allocations: 0 / 400.8 MB, free: 11.14 MB / 378.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 7.396e-05/0.0479, allocations: 100.2 kB / 400.9 MB, free: 11.02 MB / 378.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 3.039e-05/0.04793, allocations: 35.75 kB / 401 MB, free: 10.98 MB / 378.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.217e-05/0.04796, allocations: 0 / 401 MB, free: 10.98 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.713e-05/0.04799, allocations: 8 kB / 401 MB, free: 10.97 MB / 378.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.126e-05/0.048, allocations: 3.938 kB / 401 MB, free: 10.97 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.733e-06/0.04801, allocations: 0 / 401 MB, free: 10.97 MB / 378.7 MB
Notification: Performance of sorting global known variables: time 0.0001454/0.04815, allocations: 291 kB / 401.3 MB, free: 10.68 MB / 378.7 MB
Notification: Performance of sort global known variables: time 8e-08/0.04815, allocations: 0 / 401.3 MB, free: 10.68 MB / 378.7 MB
Notification: Performance of remove unused functions: time 0.0004001/0.04855, allocations: 191.2 kB / 401.5 MB, free: 10.5 MB / 378.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0004057/0.04896, allocations: 318.5 kB / 401.8 MB, free: 10.18 MB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.000159/0.04912, allocations: 123.7 kB / 401.9 MB, free: 10.05 MB / 378.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.934e-06/0.04912, allocations: 0 / 401.9 MB, free: 10.05 MB / 378.7 MB
Notification: Performance of simCode: created simulation system equations: time 9.117e-06/0.04913, allocations: 13.42 kB / 401.9 MB, free: 10.04 MB / 378.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002891/0.04942, allocations: 91.39 kB / 402 MB, free: 9.957 MB / 378.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009127/0.05033, allocations: 0.522 MB / 402.5 MB, free: 9.398 MB / 378.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.59e-05/0.05038, allocations: 92.61 kB / 402.6 MB, free: 9.289 MB / 378.7 MB
Notification: Performance of simCode: alias equations: time 0.0001497/0.05052, allocations: 79.05 kB / 402.7 MB, free: 9.215 MB / 378.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001375/0.05066, allocations: 150.1 kB / 402.8 MB, free: 9.066 MB / 378.7 MB
Notification: Performance of SimCode: time 5.61e-07/0.05066, allocations: 0 / 402.8 MB, free: 9.066 MB / 378.7 MB
Notification: Performance of Templates: time 0.008704/0.05937, allocations: 7.159 MB / 410 MB, free: 1.961 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.8686313265934587]