Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009899/0.0009899, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001079/0.001079, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9859/0.9859, allocations: 177.2 MB / 203.7 MB, free: 5.508 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1016/0.1016, allocations: 17.47 MB / 277.7 MB, free: 11.41 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.743e-06/1.743e-06, allocations: 3.938 kB / 354 MB, free: 9.562 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.844e-05/3.019e-05, allocations: 2.312 kB / 354 MB, free: 9.559 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.04084/0.04087, allocations: 39.28 MB / 393.3 MB, free: 2.375 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01545/0.05631, allocations: 11.66 MB / 404.9 MB, free: 6.672 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003338/0.05965, allocations: 111.1 kB / 405.1 MB, free: 6.562 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.004548/0.0642, allocations: 2.121 MB / 407.2 MB, free: 4.43 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.004974/0.06917, allocations: 1.97 MB / 409.1 MB, free: 2.445 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1651/0.2342, allocations: 4.479 MB / 413.6 MB, free: 36.32 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.006381/0.2406, allocations: 4.803 MB / 418.4 MB, free: 35.37 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001331/0.242, allocations: 0.8123 MB / 419.2 MB, free: 35.14 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.003902/0.2459, allocations: 2.639 MB / 421.9 MB, free: 34.92 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002748/0.2486, allocations: 2.102 MB / 424 MB, free: 34.75 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0007714/0.2494, allocations: 407.9 kB / 424.4 MB, free: 34.75 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004277/0.2537, allocations: 2.149 MB / 426.5 MB, free: 34.68 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0008776/0.2545, allocations: 1.377 MB / 427.9 MB, free: 34.12 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001895/0.2564, allocations: 1.498 MB / 429.4 MB, free: 33.49 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.006363/0.2628, allocations: 5.672 MB / 435.1 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.598e-06/0.2628, allocations: 0 / 435.1 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.082e-06/0.2628, allocations: 0 / 435.1 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001738/0.263, allocations: 0 / 435.1 MB, free: 31.23 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.006618/0.2696, allocations: 5.769 MB / 440.8 MB, free: 27.46 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.712e-05/0.2696, allocations: 8.031 kB / 440.9 MB, free: 27.46 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002239/0.2719, allocations: 2.168 MB / 443 MB, free: 25.31 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002195/0.2741, allocations: 2.501 MB / 445.5 MB, free: 22.89 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002234/0.2743, allocations: 0.6388 MB / 446.2 MB, free: 22.19 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002824/0.2746, allocations: 399 kB / 446.5 MB, free: 21.81 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.003883/0.2784, allocations: 4.875 MB / 451.4 MB, free: 17.12 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.881e-05/0.2785, allocations: 3.375 kB / 451.4 MB, free: 17.12 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001622/0.2787, allocations: 164.8 kB / 451.6 MB, free: 16.97 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002983/0.279, allocations: 0.5947 MB / 452.2 MB, free: 16.38 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.004042/0.283, allocations: 5.907 MB / 458.1 MB, free: 10.45 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01988/0.3029, allocations: 19.12 MB / 477.2 MB, free: 8.09 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002138/0.305, allocations: 1.586 MB / 478.8 MB, free: 6.551 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001077/0.3061, allocations: 1.084 MB / 479.9 MB, free: 5.465 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01347/0.3196, allocations: 12.11 MB / 492 MB, free: 9.52 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.491e-05/0.3196, allocations: 51.39 kB / 492 MB, free: 9.461 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.807e-06/0.3196, allocations: 0 / 492 MB, free: 9.461 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.03621/0.3558, allocations: 18.77 MB / 0.4988 GB, free: 6.777 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.792e-05/0.3559, allocations: 81.41 kB / 0.4989 GB, free: 6.684 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00239/0.3582, allocations: 2.403 MB / 0.5013 GB, free: 4.613 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0004483/0.3587, allocations: 68.83 kB / 0.5013 GB, free: 4.543 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001562/0.3603, allocations: 2.481 MB / 0.5038 GB, free: 2.156 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0009636/0.3612, allocations: 1.159 MB / 0.5049 GB, free: 1.062 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001523/0.3627, allocations: 1.042 MB / 0.5059 GB, free: 96 kB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001199/0.3629, allocations: 476.8 kB / 0.5064 GB, free: 15.62 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.00185/0.3647, allocations: 1.559 MB / 0.5079 GB, free: 14.07 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.002738/0.3675, allocations: 3.252 MB / 0.5111 GB, free: 10.23 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.007309/0.3748, allocations: 7.393 MB / 0.5183 GB, free: 2.43 MB / 394.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.2221667459234595]