Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009352/0.0009352, allocations: 85.27 kB / 19.87 MB, free: 4.617 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001017/0.001017, allocations: 165 kB / 23.27 MB, free: 1.219 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.009/1.009, allocations: 177.1 MB / 203.7 MB, free: 5.531 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08886/0.08886, allocations: 17.47 MB / 277.7 MB, free: 11.42 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.763e-06/1.763e-06, allocations: 0 / 354 MB, free: 10.63 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.331e-05/1.507e-05, allocations: 2.312 kB / 354 MB, free: 10.62 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.03288/0.03289, allocations: 39.28 MB / 393.3 MB, free: 3.402 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.0144/0.04729, allocations: 11.65 MB / 404.9 MB, free: 7.699 MB / 378.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00199/0.04928, allocations: 107.1 kB / 405 MB, free: 7.594 MB / 378.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.003391/0.05267, allocations: 2.128 MB / 407.2 MB, free: 5.453 MB / 378.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003226/0.0559, allocations: 1.966 MB / 409.1 MB, free: 3.473 MB / 378.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.00538/0.06128, allocations: 4.489 MB / 413.6 MB, free: 14.96 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.004696/0.06598, allocations: 4.802 MB / 418.4 MB, free: 10.14 MB / 394.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0009799/0.06696, allocations: 0.8149 MB / 419.2 MB, free: 9.266 MB / 394.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002711/0.06967, allocations: 2.635 MB / 421.9 MB, free: 6.625 MB / 394.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002508/0.07218, allocations: 2.108 MB / 424 MB, free: 4.512 MB / 394.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003838/0.07256, allocations: 404 kB / 424.4 MB, free: 4.117 MB / 394.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.00341/0.07597, allocations: 2.148 MB / 426.5 MB, free: 1.965 MB / 394.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006909/0.07666, allocations: 1.378 MB / 427.9 MB, free: 0.582 MB / 394.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0011/0.07776, allocations: 1.5 MB / 429.4 MB, free: 15.08 MB / 410.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004939/0.0827, allocations: 5.664 MB / 435.1 MB, free: 9.395 MB / 410.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.79e-06/0.0827, allocations: 0 / 435.1 MB, free: 9.395 MB / 410.7 MB
Notification: Performance of FrontEnd: time 1.834e-06/0.08271, allocations: 0 / 435.1 MB, free: 9.395 MB / 410.7 MB
Notification: Performance of Transformations before backend: time 3.282e-05/0.08274, allocations: 0 / 435.1 MB, free: 9.395 MB / 410.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.005563/0.0883, allocations: 5.767 MB / 440.8 MB, free: 3.555 MB / 410.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.218e-05/0.08834, allocations: 15.97 kB / 440.9 MB, free: 3.539 MB / 410.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002259/0.0906, allocations: 2.172 MB / 443 MB, free: 1.363 MB / 410.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1686/0.2592, allocations: 2.491 MB / 445.5 MB, free: 91.46 MB / 410.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003187/0.2595, allocations: 0.6413 MB / 446.2 MB, free: 91.07 MB / 410.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003958/0.2599, allocations: 394.8 kB / 446.5 MB, free: 91.07 MB / 410.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.005064/0.265, allocations: 4.878 MB / 451.4 MB, free: 90.73 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.878e-05/0.265, allocations: 1 kB / 451.4 MB, free: 90.73 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000211/0.2652, allocations: 158.3 kB / 451.6 MB, free: 90.73 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004132/0.2656, allocations: 0.5901 MB / 452.2 MB, free: 90.71 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.005191/0.2708, allocations: 5.912 MB / 458.1 MB, free: 90.59 MB / 410.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0295/0.3003, allocations: 19.11 MB / 477.2 MB, free: 83.09 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002071/0.3024, allocations: 1.579 MB / 478.8 MB, free: 82.88 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001201/0.3036, allocations: 1.094 MB / 479.9 MB, free: 82.8 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01184/0.3154, allocations: 12.11 MB / 492 MB, free: 76.41 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.642e-05/0.3155, allocations: 51.17 kB / 492 MB, free: 76.36 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.066e-06/0.3155, allocations: 2.656 kB / 492 MB, free: 76.36 MB / 410.7 MB
Notification: Performance of matching and sorting (n=324): time 0.03466/0.3501, allocations: 18.79 MB / 0.4988 GB, free: 62.89 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.339e-05/0.3502, allocations: 77.41 kB / 0.4989 GB, free: 62.8 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002191/0.3523, allocations: 2.404 MB / 0.5013 GB, free: 61.15 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0007884/0.3531, allocations: 65.7 kB / 0.5013 GB, free: 61.08 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0009649/0.3541, allocations: 2.488 MB / 0.5038 GB, free: 58.93 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0008933/0.355, allocations: 1.154 MB / 0.5049 GB, free: 57.93 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001356/0.3563, allocations: 1.042 MB / 0.5059 GB, free: 57.1 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 3.879e-05/0.3564, allocations: 479.3 kB / 0.5064 GB, free: 56.63 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001493/0.3579, allocations: 1.557 MB / 0.5079 GB, free: 55.29 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001921/0.3598, allocations: 3.258 MB / 0.5111 GB, free: 51.72 MB / 410.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.005758/0.3656, allocations: 7.385 MB / 0.5183 GB, free: 44.28 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.1372374002821743]