Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001199/0.001199, allocations: 86.05 kB / 19.87 MB, free: 4.617 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001014/0.001014, allocations: 170 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9778/0.9778, allocations: 177.2 MB / 203.7 MB, free: 5.52 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08868/0.08868, allocations: 17.46 MB / 277.7 MB, free: 11.41 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.873e-06/1.873e-06, allocations: 0 / 354 MB, free: 10.66 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.814e-05/3.002e-05, allocations: 2.312 kB / 354 MB, free: 10.65 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.04122/0.04125, allocations: 39.7 MB / 393.7 MB, free: 3.004 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01577/0.05702, allocations: 11.9 MB / 405.6 MB, free: 7.055 MB / 378.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00361/0.06063, allocations: 99.25 kB / 405.7 MB, free: 6.957 MB / 378.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006347/0.06698, allocations: 2.245 MB / 407.9 MB, free: 4.699 MB / 378.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00631/0.07329, allocations: 2.016 MB / 410 MB, free: 2.668 MB / 378.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.009263/0.08255, allocations: 4.544 MB / 414.5 MB, free: 14.11 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.008481/0.09104, allocations: 5.035 MB / 419.5 MB, free: 9.051 MB / 394.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002319/0.09336, allocations: 1.331 MB / 420.9 MB, free: 7.633 MB / 394.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.005861/0.09922, allocations: 3.154 MB / 424 MB, free: 4.473 MB / 394.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004603/0.1038, allocations: 2.408 MB / 426.4 MB, free: 2.059 MB / 394.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001344/0.1052, allocations: 0.5273 MB / 427 MB, free: 1.531 MB / 394.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006504/0.1117, allocations: 2.312 MB / 429.3 MB, free: 15.21 MB / 410.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.002275/0.1139, allocations: 1.706 MB / 431 MB, free: 13.5 MB / 410.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.003897/0.1178, allocations: 1.781 MB / 432.7 MB, free: 11.72 MB / 410.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01045/0.1283, allocations: 6.626 MB / 439.4 MB, free: 5.07 MB / 410.7 MB
Notification: Performance of FrontEnd - DAE generated: time 8.186e-06/0.1283, allocations: 0 / 439.4 MB, free: 5.07 MB / 410.7 MB
Notification: Performance of FrontEnd: time 1.262e-06/0.1283, allocations: 0 / 439.4 MB, free: 5.07 MB / 410.7 MB
Notification: Performance of Transformations before backend: time 0.0002515/0.1286, allocations: 3.938 kB / 439.4 MB, free: 5.066 MB / 410.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.1632/0.2918, allocations: 6.628 MB / 446 MB, free: 91.13 MB / 410.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.018e-05/0.2918, allocations: 8.781 kB / 446 MB, free: 91.13 MB / 410.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003236/0.295, allocations: 2.279 MB / 448.3 MB, free: 90.79 MB / 410.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002671/0.2977, allocations: 2.509 MB / 450.8 MB, free: 90.4 MB / 410.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003046/0.298, allocations: 0.731 MB / 451.5 MB, free: 89.95 MB / 410.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004022/0.2984, allocations: 455.5 kB / 452 MB, free: 89.95 MB / 410.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.005733/0.3042, allocations: 4.991 MB / 457 MB, free: 89.57 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 6.803e-05/0.3042, allocations: 5.406 kB / 457 MB, free: 89.57 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002143/0.3044, allocations: 187 kB / 457.2 MB, free: 89.57 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003816/0.3048, allocations: 0.5513 MB / 457.7 MB, free: 89.56 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.004774/0.3096, allocations: 5.006 MB / 462.7 MB, free: 89.43 MB / 410.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02549/0.3351, allocations: 21.39 MB / 484.1 MB, free: 78.32 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002115/0.3372, allocations: 1.713 MB / 485.8 MB, free: 78.11 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001251/0.3384, allocations: 1.17 MB / 487 MB, free: 78.04 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01423/0.3527, allocations: 13.96 MB / 0.4892 GB, free: 69.87 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.39e-05/0.3527, allocations: 54.11 kB / 0.4893 GB, free: 69.82 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=289): time 4.699e-06/0.3527, allocations: 0 / 0.4893 GB, free: 69.82 MB / 410.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.1927888160571456]