Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008372/0.0008372, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009166/0.0009166, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9735/0.9735, allocations: 177.2 MB / 203.7 MB, free: 5.516 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09846/0.09846, allocations: 17.38 MB / 277.6 MB, free: 11.5 MB / 266.7 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.683e-06/1.683e-06, allocations: 0 / 353.9 MB, free: 9.664 MB / 282.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 1.217e-05/1.386e-05, allocations: 2.312 kB / 353.9 MB, free: 9.66 MB / 282.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.03518/0.03519, allocations: 43.53 MB / 397.5 MB, free: 14.21 MB / 330.7 MB Notification: Performance of NFInst.instExpressions: time 0.1696/0.2048, allocations: 25.73 MB / 423.2 MB, free: 33.86 MB / 330.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.003394/0.2082, allocations: 79.53 kB / 423.3 MB, free: 33.86 MB / 330.7 MB Notification: Performance of NFTyping.typeComponents: time 0.001881/0.21, allocations: 0.9511 MB / 424.2 MB, free: 33.82 MB / 330.7 MB Notification: Performance of NFTyping.typeBindings: time 0.007314/0.2173, allocations: 3.327 MB / 427.6 MB, free: 32.71 MB / 330.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.01019/0.2275, allocations: 4.983 MB / 432.5 MB, free: 30.12 MB / 330.7 MB Notification: Performance of NFFlatten.flatten: time 0.0169/0.2444, allocations: 27.42 MB / 460 MB, free: 10.27 MB / 330.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.01402/0.2585, allocations: 17.1 MB / 477.1 MB, free: 10.1 MB / 346.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.02628/0.2847, allocations: 23.01 MB / 0.4883 GB, free: 3.629 MB / 362.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.02178/0.3065, allocations: 16.6 MB / 0.5046 GB, free: 3.836 MB / 378.7 MB Notification: Performance of NFPackage.collectConstants: time 0.009324/0.3158, allocations: 3.133 MB / 0.5076 GB, free: 0.7031 MB / 378.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.01453/0.3304, allocations: 5.233 MB / 0.5127 GB, free: 11.51 MB / 394.7 MB Notification: Performance of NFScalarize.scalarize: time 0.00673/0.3371, allocations: 7.159 MB / 0.5197 GB, free: 4.844 MB / 394.7 MB Notification: Performance of NFVerifyModel.verify: time 0.0143/0.3514, allocations: 9.417 MB / 0.5289 GB, free: 11.93 MB / 410.7 MB Notification: Performance of NFConvertDAE.convert: time 0.03115/0.3826, allocations: 27.23 MB / 0.5555 GB, free: 1.91 MB / 426.7 MB Notification: Performance of FrontEnd - DAE generated: time 5.691e-06/0.3826, allocations: 0 / 0.5555 GB, free: 1.91 MB / 426.7 MB Notification: Performance of FrontEnd: time 1.623e-06/0.3826, allocations: 0 / 0.5555 GB, free: 1.91 MB / 426.7 MB Notification: Performance of Transformations before backend: time 0.0007398/0.3833, allocations: 0 / 0.5555 GB, free: 1.91 MB / 426.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.2973/0.6806, allocations: 21.04 MB / 0.5761 GB, free: 101.9 MB / 426.8 MB Notification: Performance of prepare preOptimizeDAE: time 4.562e-05/0.6806, allocations: 10.78 kB / 0.5761 GB, free: 101.9 MB / 426.8 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.02006/0.7007, allocations: 6.554 MB / 0.5825 GB, free: 99.66 MB / 426.8 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.02045/0.7211, allocations: 9.923 MB / 0.5922 GB, free: 94.89 MB / 426.8 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001133/0.7223, allocations: 3.056 MB / 0.5951 GB, free: 91.39 MB / 426.8 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.004182/0.7265, allocations: 1.527 MB / 0.5966 GB, free: 89.88 MB / 426.8 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.02574/0.7522, allocations: 17.65 MB / 0.6139 GB, free: 72.54 MB / 426.8 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0001954/0.7524, allocations: 11.03 kB / 0.6139 GB, free: 72.53 MB / 426.8 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001694/0.7541, allocations: 0.5889 MB / 0.6145 GB, free: 71.95 MB / 426.8 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0001371/0.7542, allocations: 363.9 kB / 0.6148 GB, free: 71.59 MB / 426.8 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.02079/0.775, allocations: 16.74 MB / 0.6312 GB, free: 54.87 MB / 426.8 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.1317/0.9067, allocations: 80.73 MB / 0.71 GB, free: 7.965 MB / 458.8 MB Notification: Performance of preOpt comSubExp (simulation): time 0.8528/1.759, allocations: 328.4 MB / 1.031 GB, free: 71.74 MB / 490.9 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.01047/1.77, allocations: 6.619 MB / 1.037 GB, free: 65.27 MB / 490.9 MB Notification: Performance of preOpt evalFunc (simulation): time 0.0523/1.822, allocations: 46.06 MB / 1.082 GB, free: 21.35 MB / 490.9 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.196e-05/1.822, allocations: 135.7 kB / 1.082 GB, free: 21.21 MB / 490.9 MB Notification: Performance of preOpt simplifyInStream (simulation): time 0.01255/1.835, allocations: 5.698 MB / 1.088 GB, free: 16.36 MB / 490.9 MB Notification: Performance of pre-optimization done (n=983): time 3.626e-05/1.835, allocations: 0 / 1.088 GB, free: 16.36 MB / 490.9 MB Notification: Performance of matching and sorting (n=1117): time 0.4147/2.25, allocations: 63.26 MB / 1.15 GB, free: 135.3 MB / 490.9 MB Notification: Performance of inlineWhenForInitialization (initialization): time 7.243e-05/2.25, allocations: 167.6 kB / 1.15 GB, free: 135.1 MB / 490.9 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00707/2.257, allocations: 8.495 MB / 1.158 GB, free: 129.1 MB / 490.9 MB Notification: Performance of collectPreVariables (initialization): time 0.002443/2.259, allocations: 209.7 kB / 1.158 GB, free: 128.9 MB / 490.9 MB Notification: Performance of collectInitialEqns (initialization): time 0.002768/2.262, allocations: 7.677 MB / 1.166 GB, free: 122.5 MB / 490.9 MB Notification: Performance of collectInitialBindings (initialization): time 0.003241/2.265, allocations: 4.286 MB / 1.17 GB, free: 118.9 MB / 490.9 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.003469/2.269, allocations: 3.435 MB / 1.173 GB, free: 115.8 MB / 490.9 MB Notification: Performance of setup shared object (initialization): time 4.24e-05/2.269, allocations: 480.7 kB / 1.174 GB, free: 115.3 MB / 490.9 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00353/2.272, allocations: 3.073 MB / 1.177 GB, free: 112.2 MB / 490.9 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.005358/2.278, allocations: 9.977 MB / 1.186 GB, free: 99.86 MB / 490.9 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.01104/2.289, allocations: 14.66 MB / 1.201 GB, free: 83.29 MB / 490.9 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.983e-05/2.289, allocations: 40 kB / 1.201 GB, free: 83.25 MB / 490.9 MB Notification: Performance of matching and sorting (n=1861) (initialization): time 0.1684/2.457, allocations: 40.79 MB / 1.241 GB, free: 43.36 MB / 490.9 MB Notification: Performance of prepare postOptimizeDAE: time 9.932e-05/2.457, allocations: 68 kB / 1.241 GB, free: 43.29 MB / 490.9 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0001579/2.457, allocations: 148 kB / 1.241 GB, free: 43.15 MB / 490.9 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.2486/2.706, allocations: 46.55 MB / 1.286 GB, free: 120.6 MB / 490.9 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.008965/2.715, allocations: 3.517 MB / 1.29 GB, free: 120.6 MB / 490.9 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.05861/2.774, allocations: 24.93 MB / 1.314 GB, free: 115 MB / 490.9 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01039/2.784, allocations: 473.5 kB / 1.315 GB, free: 114.7 MB / 490.9 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.002141/2.786, allocations: 0.8007 MB / 1.315 GB, free: 114.6 MB / 490.9 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 661 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1813): * Single equations (assignments): 1810 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.004733/2.791, allocations: 1.062 MB / 1.316 GB, free: 114.1 MB / 490.9 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.002937/2.794, allocations: 1.395 MB / 1.318 GB, free: 113.9 MB / 490.9 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.102/2.896, allocations: 26.56 MB / 1.344 GB, free: 98.61 MB / 490.9 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.599e-05/2.896, allocations: 118.1 kB / 1.344 GB, free: 98.49 MB / 490.9 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.022e-05/2.896, allocations: 21 kB / 1.344 GB, free: 98.47 MB / 490.9 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003014/2.896, allocations: 65.78 kB / 1.344 GB, free: 98.41 MB / 490.9 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.1679/3.064, allocations: 43.56 MB / 1.386 GB, free: 57 MB / 490.9 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.161e-05/3.064, allocations: 4 kB / 1.386 GB, free: 57 MB / 490.9 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.006943/3.071, allocations: 2.261 MB / 1.389 GB, free: 54.85 MB / 490.9 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.03812/3.109, allocations: 15.4 MB / 1.404 GB, free: 39.62 MB / 490.9 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.002458/3.112, allocations: 459.5 kB / 1.404 GB, free: 39.17 MB / 490.9 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.03516/3.147, allocations: 14.7 MB / 1.418 GB, free: 24.4 MB / 490.9 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.966e-06/3.147, allocations: 7.188 kB / 1.418 GB, free: 24.4 MB / 490.9 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.1074/3.254, allocations: 30.96 MB / 1.449 GB, free: 9.785 MB / 0.495 GB Notification: Performance of postOpt removeConstants (simulation): time 0.005909/3.26, allocations: 2.512 MB / 1.451 GB, free: 7.285 MB / 0.495 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.001662/3.262, allocations: 287.9 kB / 1.451 GB, free: 7.004 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.00449/3.266, allocations: 255.9 kB / 1.452 GB, free: 6.754 MB / 0.495 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.002251/3.269, allocations: 1.264 MB / 1.453 GB, free: 5.488 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0007944/3.269, allocations: 375.6 kB / 1.453 GB, free: 5.121 MB / 0.495 GB Notification: Performance of sorting global known variables: time 0.1673/3.437, allocations: 3.874 MB / 1.457 GB, free: 133.6 MB / 0.495 GB Notification: Performance of sort global known variables: time 1.8e-07/3.437, allocations: 2.281 kB / 1.457 GB, free: 133.6 MB / 0.495 GB Notification: Performance of remove unused functions: time 0.01887/3.456, allocations: 5.234 MB / 1.462 GB, free: 133.6 MB / 0.495 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1222): * Single equations (assignments): 1219 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.003304/3.459, allocations: 1.422 MB / 1.464 GB, free: 133.5 MB / 0.495 GB Notification: Performance of simCode: created initialization part: time 0.0299/3.489, allocations: 11.89 MB / 1.475 GB, free: 132.5 MB / 0.495 GB Notification: Performance of simCode: created event and clocks part: time 5.17e-06/3.489, allocations: 3.031 kB / 1.475 GB, free: 132.5 MB / 0.495 GB Notification: Performance of simCode: created simulation system equations: time 0.01443/3.503, allocations: 6.477 MB / 1.482 GB, free: 131.8 MB / 0.495 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.006988/3.51, allocations: 2.635 MB / 1.484 GB, free: 131.7 MB / 0.495 GB Error: Error parsing unit kDa: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.03805/3.548, allocations: 28.66 MB / 1.512 GB, free: 114.9 MB / 0.495 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.003071/3.551, allocations: 4.372 MB / 1.516 GB, free: 112.5 MB / 0.495 GB Notification: Performance of simCode: alias equations: time 0.005968/3.557, allocations: 1.726 MB / 1.518 GB, free: 111.5 MB / 0.495 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.005184/3.562, allocations: 2.956 MB / 1.521 GB, free: 109.2 MB / 0.495 GB Notification: Performance of SimCode: time 1.253e-06/3.562, allocations: 2.656 kB / 1.521 GB, free: 109.2 MB / 0.495 GB Notification: Performance of Templates: time 0.549/4.111, allocations: 312.5 MB / 1.826 GB, free: 150.7 MB / 0.5107 GB " [Timeout remaining time 656] make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660] (rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery -abortSlowSimulation -alarm=240 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 12.353216434363276]