Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.ExothermicReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009418/0.0009418, allocations: 81.17 kB / 19.87 MB, free: 4.621 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009258/0.0009258, allocations: 169 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.951/0.951, allocations: 177.2 MB / 203.7 MB, free: 5.516 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08714/0.08714, allocations: 17.39 MB / 277.6 MB, free: 11.5 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.ExothermicReaction")
translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.ExothermicReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.883e-06/1.883e-06, allocations: 0 / 353.9 MB, free: 9.711 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.394e-05/1.582e-05, allocations: 4.703 kB / 353.9 MB, free: 9.707 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ExothermicReaction): time 0.006551/0.006567, allocations: 8.41 MB / 362.3 MB, free: 1.258 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01689/0.02345, allocations: 22.85 MB / 385.1 MB, free: 10.32 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0008707/0.02432, allocations: 27.75 kB / 385.2 MB, free: 10.29 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0009851/0.02531, allocations: 484 kB / 385.6 MB, free: 9.812 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.004092/0.0294, allocations: 2.121 MB / 387.8 MB, free: 7.676 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005802/0.0352, allocations: 3.141 MB / 390.9 MB, free: 4.516 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.002149/0.03735, allocations: 2.588 MB / 393.5 MB, free: 1.914 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001224/0.03858, allocations: 1.194 MB / 394.7 MB, free: 0.6758 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00137/0.03995, allocations: 1.724 MB / 396.4 MB, free: 14.95 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001041/0.04099, allocations: 1.142 MB / 397.6 MB, free: 13.8 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002286/0.04121, allocations: 216 kB / 397.8 MB, free: 13.59 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004874/0.04609, allocations: 2.491 MB / 400.3 MB, free: 11.1 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003137/0.0464, allocations: 0.5217 MB / 400.8 MB, free: 10.57 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.000606/0.04701, allocations: 0.7951 MB / 401.6 MB, free: 9.777 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004942/0.05195, allocations: 4.704 MB / 406.3 MB, free: 5.055 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.44e-06/0.05196, allocations: 0 / 406.3 MB, free: 5.055 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.663e-06/0.05196, allocations: 0 / 406.3 MB, free: 5.055 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 2.94e-05/0.05199, allocations: 0 / 406.3 MB, free: 5.055 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 455
 * Number of variables: 455
Notification: Performance of Generate backend data structure: time 0.002816/0.0548, allocations: 2.779 MB / 409.1 MB, free: 2.223 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.37e-05/0.05485, allocations: 8.031 kB / 409.1 MB, free: 2.215 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001194/0.05604, allocations: 0.6808 MB / 409.7 MB, free: 1.531 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000958/0.057, allocations: 0.9197 MB / 410.7 MB, free: 0.5781 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001358/0.05713, allocations: 251 kB / 410.9 MB, free: 316 kB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001889/0.05732, allocations: 180.3 kB / 411.1 MB, free: 136 kB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1287/0.186, allocations: 1.522 MB / 412.6 MB, free: 61.88 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.838e-05/0.1861, allocations: 1.625 kB / 412.6 MB, free: 61.88 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001025/0.1862, allocations: 72.69 kB / 412.7 MB, free: 61.88 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.926e-05/0.1862, allocations: 43.25 kB / 412.7 MB, free: 61.88 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001918/0.1881, allocations: 1.471 MB / 414.2 MB, free: 61.83 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00606/0.1942, allocations: 5.118 MB / 419.3 MB, free: 60.19 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002601/0.1968, allocations: 1.993 MB / 421.3 MB, free: 59.79 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003757/0.1972, allocations: 453.5 kB / 421.7 MB, free: 59.72 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.00464/0.2018, allocations: 4.273 MB / 426 MB, free: 58.05 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.105e-05/0.2018, allocations: 51.64 kB / 426.1 MB, free: 57.99 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=122): time 2.214e-06/0.2018, allocations: 2.688 kB / 426.1 MB, free: 57.99 MB / 330.7 MB
Notification: Performance of matching and sorting (n=150): time 0.01008/0.2119, allocations: 4.473 MB / 430.5 MB, free: 54.12 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.741e-05/0.2119, allocations: 94.42 kB / 430.6 MB, free: 54.01 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004306/0.2124, allocations: 0.8833 MB / 431.5 MB, free: 53.28 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.239e-05/0.2124, allocations: 57.67 kB / 431.6 MB, free: 53.22 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002594/0.2127, allocations: 0.9217 MB / 432.5 MB, free: 52.45 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002092/0.2129, allocations: 0.5424 MB / 433 MB, free: 52 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002563/0.2131, allocations: 377.2 kB / 433.4 MB, free: 51.66 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 7.547e-05/0.2132, allocations: 0.5393 MB / 433.9 MB, free: 51.14 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002526/0.2135, allocations: 267.8 kB / 434.2 MB, free: 50.88 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004684/0.2139, allocations: 1.287 MB / 435.5 MB, free: 49.18 MB / 330.7 MB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start (fixedTemperature.T = solution_at_constant_temperature.temperature_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.001024/0.2149, allocations: 1.77 MB / 437.3 MB, free: 47.02 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.125e-06/0.215, allocations: 11.98 kB / 437.3 MB, free: 47 MB / 330.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.00308/0.218, allocations: 2.037 MB / 439.3 MB, free: 44.95 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.928e-05/0.2181, allocations: 16 kB / 439.3 MB, free: 44.93 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.806e-05/0.2181, allocations: 24 kB / 439.4 MB, free: 44.91 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003527/0.2216, allocations: 1.091 MB / 440.4 MB, free: 43.8 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008356/0.2224, allocations: 0.5227 MB / 441 MB, free: 43.28 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.004464/0.2269, allocations: 8.973 MB / 449.9 MB, free: 33.91 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005241/0.2274, allocations: 68 kB / 450 MB, free: 33.84 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.04e-05/0.2275, allocations: 99.97 kB / 450.1 MB, free: 33.75 MB / 330.7 MB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 107
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (241):
 * Single equations (assignments): 237
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(3,6,77.8%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002583/0.2278, allocations: 294.5 kB / 450.4 MB, free: 33.46 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001722/0.2279, allocations: 191 kB / 450.6 MB, free: 33.27 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003294/0.2312, allocations: 2.064 MB / 452.6 MB, free: 31.26 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.62e-06/0.2312, allocations: 15.72 kB / 452.7 MB, free: 31.25 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.769e-06/0.2312, allocations: 8 kB / 452.7 MB, free: 31.24 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.446e-06/0.2312, allocations: 7.969 kB / 452.7 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002045/0.2333, allocations: 1.921 MB / 454.6 MB, free: 29.23 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.63e-06/0.2333, allocations: 8.25 kB / 454.6 MB, free: 29.22 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006226/0.2339, allocations: 307.7 kB / 454.9 MB, free: 28.92 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.004086/0.238, allocations: 1.204 MB / 456.1 MB, free: 27.7 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.689e-05/0.2381, allocations: 39.98 kB / 456.1 MB, free: 27.66 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.004356/0.2424, allocations: 10.57 MB / 466.7 MB, free: 16.52 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.693e-06/0.2424, allocations: 0 / 466.7 MB, free: 16.52 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003191/0.2456, allocations: 2.117 MB / 468.8 MB, free: 14.33 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 9.361e-05/0.2457, allocations: 123 kB / 469 MB, free: 14.21 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.749e-05/0.2458, allocations: 31.94 kB / 469 MB, free: 14.18 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003257/0.2461, allocations: 35.98 kB / 469 MB, free: 14.14 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001663/0.2463, allocations: 133.1 kB / 469.2 MB, free: 14.01 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.616e-05/0.2463, allocations: 35.98 kB / 469.2 MB, free: 13.98 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0002456/0.2466, allocations: 493.7 kB / 469.7 MB, free: 13.48 MB / 330.7 MB
Notification: Performance of sort global known variables: time 4e-08/0.2466, allocations: 0 / 469.7 MB, free: 13.48 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001887/0.2485, allocations: 1.074 MB / 470.7 MB, free: 12.45 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 12
 * Number of states: 7 (A1.logn,B1.logn,H2O.logn,A.logn,B.logn,H2O1.amountOfBonds,H2O1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (137):
 * Single equations (assignments): 132
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (2,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,1), (2,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001121/0.2496, allocations: 1.213 MB / 472 MB, free: 11.23 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001417/0.251, allocations: 1.84 MB / 473.8 MB, free: 9.324 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.725e-06/0.251, allocations: 0 / 473.8 MB, free: 9.324 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0007856/0.2518, allocations: 1.421 MB / 475.2 MB, free: 7.809 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008329/0.2526, allocations: 348.4 kB / 475.6 MB, free: 7.48 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00297/0.2556, allocations: 2.775 MB / 478.3 MB, free: 4.609 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001669/0.2558, allocations: 304.3 kB / 478.6 MB, free: 4.281 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.000578/0.2564, allocations: 303 kB / 478.9 MB, free: 3.98 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005265/0.2569, allocations: 485.9 kB / 479.4 MB, free: 3.504 MB / 330.7 MB
Notification: Performance of SimCode: time 7.42e-07/0.2569, allocations: 0 / 479.4 MB, free: 3.504 MB / 330.7 MB
Notification: Performance of Templates: time 0.04152/0.2984, allocations: 43.05 MB / 0.5102 GB, free: 8.691 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.ExothermicReaction.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.ExothermicReaction.sim & ./Chemical_Chemical.Obsolete.Examples.ExothermicReaction -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.ExothermicReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.940836851950735]