Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.000945/0.000945, allocations: 85.95 kB / 19.87 MB, free: 4.613 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009083/0.0009083, allocations: 169.7 kB / 23.27 MB, free: 1.215 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9/0.9, allocations: 177.1 MB / 203.7 MB, free: 5.504 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.0826/0.0826, allocations: 17.37 MB / 277.6 MB, free: 11.48 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.EnzymeKinetics")
translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.EnzymeKinetics") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.543e-06/1.543e-06, allocations: 0 / 353.9 MB, free: 9.691 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.446e-05/1.6e-05, allocations: 5.688 kB / 353.9 MB, free: 9.688 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.EnzymeKinetics): time 0.02444/0.02446, allocations: 30.55 MB / 384.4 MB, free: 11.27 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01355/0.03801, allocations: 19.11 MB / 403.5 MB, free: 8.086 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0007297/0.03874, allocations: 27.75 kB / 403.6 MB, free: 8.059 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0007945/0.03953, allocations: 396.8 kB / 404 MB, free: 7.668 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003283/0.04282, allocations: 1.722 MB / 405.7 MB, free: 5.934 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.004612/0.04743, allocations: 2.609 MB / 408.3 MB, free: 3.309 MB / 330.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001885/0.04931, allocations: 2.047 MB / 410.3 MB, free: 1.254 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001013/0.05032, allocations: 0.9437 MB / 411.3 MB, free: 292 kB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.1155/0.1659, allocations: 1.383 MB / 412.7 MB, free: 36.73 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001622/0.1675, allocations: 0.9503 MB / 413.6 MB, free: 36.73 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0004878/0.168, allocations: 175.8 kB / 413.8 MB, free: 36.73 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004457/0.1724, allocations: 2.065 MB / 415.8 MB, free: 36.73 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0004963/0.1729, allocations: 438.7 kB / 416.3 MB, free: 36.73 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001108/0.174, allocations: 0.6417 MB / 416.9 MB, free: 36.73 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.006932/0.181, allocations: 3.905 MB / 420.8 MB, free: 36.38 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.242e-06/0.181, allocations: 2.594 kB / 420.8 MB, free: 36.38 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.322e-06/0.181, allocations: 0 / 420.8 MB, free: 36.38 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 4.58e-05/0.181, allocations: 0 / 420.8 MB, free: 36.38 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 337
 * Number of variables: 337
Notification: Performance of Generate backend data structure: time 0.003142/0.1842, allocations: 2.255 MB / 423.1 MB, free: 35.28 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.062e-05/0.1842, allocations: 8.406 kB / 423.1 MB, free: 35.28 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001104/0.1853, allocations: 0.5562 MB / 423.6 MB, free: 35.09 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008717/0.1862, allocations: 0.7583 MB / 424.4 MB, free: 34.83 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001049/0.1863, allocations: 213 kB / 424.6 MB, free: 34.7 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001554/0.1864, allocations: 138.4 kB / 424.7 MB, free: 34.7 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001204/0.1876, allocations: 1.237 MB / 426 MB, free: 34.53 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.295e-05/0.1877, allocations: 192 / 426 MB, free: 34.53 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.519e-05/0.1878, allocations: 62.12 kB / 426 MB, free: 34.53 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.022e-05/0.1878, allocations: 36.28 kB / 426.1 MB, free: 34.52 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001211/0.189, allocations: 1.224 MB / 427.3 MB, free: 34.48 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004604/0.1936, allocations: 4.08 MB / 431.4 MB, free: 33.22 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002542/0.1961, allocations: 2.936 MB / 434.3 MB, free: 32.75 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0004026/0.1965, allocations: 419 kB / 434.7 MB, free: 32.7 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004307/0.2008, allocations: 3.625 MB / 438.4 MB, free: 29.71 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.072e-05/0.2009, allocations: 50.38 kB / 438.4 MB, free: 29.65 MB / 330.7 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0003407/0.2012, allocations: 127.2 kB / 438.5 MB, free: 29.53 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=97): time 3.837e-06/0.2012, allocations: 2.656 kB / 438.5 MB, free: 29.53 MB / 330.7 MB
Notification: Performance of matching and sorting (n=116): time 0.006748/0.208, allocations: 3.095 MB / 441.6 MB, free: 26.48 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.678e-05/0.208, allocations: 64.34 kB / 441.7 MB, free: 26.4 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004407/0.2084, allocations: 0.7362 MB / 442.4 MB, free: 25.77 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.414e-05/0.2085, allocations: 45.7 kB / 442.5 MB, free: 25.72 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002098/0.2087, allocations: 0.7226 MB / 443.2 MB, free: 25.03 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0001685/0.2089, allocations: 428.8 kB / 443.6 MB, free: 24.64 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002111/0.2091, allocations: 307.2 kB / 443.9 MB, free: 24.36 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 7.226e-05/0.2092, allocations: 0.5347 MB / 444.4 MB, free: 23.84 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002325/0.2094, allocations: 219.8 kB / 444.7 MB, free: 23.63 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003883/0.2098, allocations: 0.947 MB / 445.6 MB, free: 22.41 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0007619/0.2105, allocations: 1.319 MB / 446.9 MB, free: 20.91 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.951e-06/0.2105, allocations: 4 kB / 446.9 MB, free: 20.9 MB / 330.7 MB
Notification: Performance of matching and sorting (n=197) (initialization): time 0.002133/0.2127, allocations: 1.474 MB / 448.4 MB, free: 19.54 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.105e-05/0.2127, allocations: 12 kB / 448.4 MB, free: 19.53 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.388e-05/0.2127, allocations: 20 kB / 448.4 MB, free: 19.51 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.001429/0.2141, allocations: 463.8 kB / 448.9 MB, free: 19.07 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005864/0.2147, allocations: 374.9 kB / 449.3 MB, free: 18.73 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.002299/0.217, allocations: 4.326 MB / 453.6 MB, free: 14.25 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006499/0.2177, allocations: 52 kB / 453.6 MB, free: 14.2 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.788e-05/0.2177, allocations: 75.97 kB / 453.7 MB, free: 14.12 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 75
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (190):
 * Single equations (assignments): 187
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.00031/0.2181, allocations: 260.7 kB / 454 MB, free: 13.89 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001716/0.2182, allocations: 147.2 kB / 454.1 MB, free: 13.74 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002049/0.2203, allocations: 1.309 MB / 455.4 MB, free: 12.47 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.634e-06/0.2203, allocations: 12 kB / 455.4 MB, free: 12.46 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.24e-06/0.2203, allocations: 2.688 kB / 455.4 MB, free: 12.46 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.508e-06/0.2203, allocations: 3.984 kB / 455.4 MB, free: 12.46 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0009928/0.2213, allocations: 0.927 MB / 456.4 MB, free: 11.62 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.104e-06/0.2213, allocations: 3.938 kB / 456.4 MB, free: 11.62 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004304/0.2217, allocations: 235.7 kB / 456.6 MB, free: 11.41 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.001397/0.2231, allocations: 440.5 kB / 457 MB, free: 10.99 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.341e-05/0.2232, allocations: 43.97 kB / 457.1 MB, free: 10.95 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.001928/0.2251, allocations: 4.225 MB / 461.3 MB, free: 6.551 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.453e-06/0.2251, allocations: 0 / 461.3 MB, free: 6.551 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00226/0.2274, allocations: 1.566 MB / 462.9 MB, free: 4.969 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0003432/0.2277, allocations: 203.2 kB / 463.1 MB, free: 4.77 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 7.715e-05/0.2278, allocations: 20 kB / 463.1 MB, free: 4.75 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000282/0.2281, allocations: 27.98 kB / 463.1 MB, free: 4.723 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001514/0.2282, allocations: 120 kB / 463.2 MB, free: 4.609 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.333e-05/0.2283, allocations: 43.97 kB / 463.3 MB, free: 4.566 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0002131/0.2285, allocations: 406.5 kB / 463.7 MB, free: 4.211 MB / 330.7 MB
Notification: Performance of sort global known variables: time 5e-08/0.2285, allocations: 2.656 kB / 463.7 MB, free: 4.211 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001938/0.2304, allocations: 0.8415 MB / 464.5 MB, free: 3.367 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 6 (solution.temperature,P.logn,S.logn,ES.logn,E.logn,liquidWater.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (120):
 * Single equations (assignments): 117
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001345/0.2318, allocations: 1.022 MB / 465.5 MB, free: 2.496 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001246/0.233, allocations: 1.227 MB / 466.8 MB, free: 1.312 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 3.336e-06/0.233, allocations: 4 kB / 466.8 MB, free: 1.309 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0005591/0.2336, allocations: 0.7995 MB / 467.6 MB, free: 0.5039 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000719/0.2343, allocations: 265.2 kB / 467.8 MB, free: 284 kB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003043/0.2374, allocations: 2.185 MB / 470 MB, free: 14.11 MB / 346.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001689/0.2375, allocations: 234.4 kB / 470.2 MB, free: 13.86 MB / 346.7 MB
Notification: Performance of simCode: alias equations: time 0.0006861/0.2382, allocations: 275.7 kB / 470.5 MB, free: 13.67 MB / 346.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005705/0.2388, allocations: 421.9 kB / 470.9 MB, free: 13.25 MB / 346.7 MB
Notification: Performance of SimCode: time 1.102e-06/0.2388, allocations: 0 / 470.9 MB, free: 13.25 MB / 346.7 MB
Notification: Performance of Templates: time 0.03804/0.2768, allocations: 32.93 MB / 0.492 GB, free: 13.46 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.sim & ./Chemical_Chemical.Obsolete.Examples.EnzymeKinetics -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.5537192011252046]