Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009202/0.0009202, allocations: 86.05 kB / 19.87 MB, free: 4.617 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001097/0.001097, allocations: 170 kB / 23.27 MB, free: 1.223 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.903/0.903, allocations: 177.1 MB / 203.7 MB, free: 5.516 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08187/0.08187, allocations: 17.38 MB / 277.6 MB, free: 11.5 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.044e-06/2.044e-06, allocations: 0 / 353.9 MB, free: 10.77 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.466e-05/2.67e-05, allocations: 2.312 kB / 353.9 MB, free: 10.77 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.03488/0.03491, allocations: 26.94 MB / 380.8 MB, free: 15.92 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005163/0.04007, allocations: 6.192 MB / 387 MB, free: 9.711 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002241/0.04029, allocations: 15.88 kB / 387 MB, free: 9.695 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0003548/0.04065, allocations: 138.8 kB / 387.2 MB, free: 9.559 MB / 362.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0006716/0.04132, allocations: 273.8 kB / 387.4 MB, free: 9.289 MB / 362.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001462/0.04278, allocations: 1.017 MB / 388.5 MB, free: 8.266 MB / 362.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0004174/0.0432, allocations: 0.5175 MB / 389 MB, free: 7.746 MB / 362.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002089/0.04341, allocations: 173 kB / 389.2 MB, free: 7.574 MB / 362.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002198/0.04363, allocations: 323.4 kB / 389.5 MB, free: 7.258 MB / 362.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002275/0.04386, allocations: 227.5 kB / 389.7 MB, free: 7.035 MB / 362.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.152e-05/0.0439, allocations: 32 kB / 389.7 MB, free: 7.004 MB / 362.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0006482/0.04455, allocations: 0.5185 MB / 390.2 MB, free: 6.484 MB / 362.7 MB
Notification: Performance of NFScalarize.scalarize: time 8.048e-05/0.04463, allocations: 99.59 kB / 390.3 MB, free: 6.387 MB / 362.7 MB
Notification: Performance of NFVerifyModel.verify: time 9.377e-05/0.04472, allocations: 143.7 kB / 390.5 MB, free: 6.246 MB / 362.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.0008928/0.04561, allocations: 1.043 MB / 391.5 MB, free: 5.199 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.498e-06/0.04562, allocations: 0 / 391.5 MB, free: 5.199 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.272e-06/0.04562, allocations: 0 / 391.5 MB, free: 5.199 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 4.208e-06/0.04562, allocations: 0 / 391.5 MB, free: 5.199 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0006878/0.04631, allocations: 0.8298 MB / 392.4 MB, free: 4.328 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.591e-05/0.04635, allocations: 12.02 kB / 392.4 MB, free: 4.316 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003423/0.04669, allocations: 179.9 kB / 392.5 MB, free: 4.141 MB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003022/0.04699, allocations: 332.3 kB / 392.9 MB, free: 3.789 MB / 362.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.557e-05/0.04701, allocations: 21.03 kB / 392.9 MB, free: 3.77 MB / 362.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.968e-05/0.04704, allocations: 24.38 kB / 392.9 MB, free: 3.746 MB / 362.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003099/0.04735, allocations: 376.2 kB / 393.3 MB, free: 3.328 MB / 362.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.13e-05/0.04736, allocations: 11.88 kB / 393.3 MB, free: 3.316 MB / 362.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.391e-05/0.04738, allocations: 12 kB / 393.3 MB, free: 3.305 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.125e-06/0.04739, allocations: 8 kB / 393.3 MB, free: 3.297 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003318/0.04772, allocations: 369 kB / 393.7 MB, free: 2.941 MB / 362.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001537/0.04926, allocations: 2.043 MB / 395.7 MB, free: 0.8125 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001426/0.0494, allocations: 94.95 kB / 395.8 MB, free: 0.707 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 5.389e-05/0.04945, allocations: 43.66 kB / 395.8 MB, free: 0.6602 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.0009788/0.05043, allocations: 1.006 MB / 396.8 MB, free: 15.64 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.005e-05/0.05045, allocations: 41.39 kB / 396.9 MB, free: 15.59 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.052e-06/0.05045, allocations: 0 / 396.9 MB, free: 15.59 MB / 378.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0001918/0.05065, allocations: 121.4 kB / 397 MB, free: 15.47 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.581e-05/0.05067, allocations: 55.41 kB / 397.1 MB, free: 15.4 MB / 378.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002295/0.0509, allocations: 430.2 kB / 397.5 MB, free: 14.96 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.033e-05/0.05091, allocations: 25.7 kB / 397.5 MB, free: 14.93 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001339/0.05105, allocations: 334.2 kB / 397.8 MB, free: 14.6 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.003e-05/0.05107, allocations: 39.69 kB / 397.9 MB, free: 14.56 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.935e-05/0.05116, allocations: 87.27 kB / 398 MB, free: 14.47 MB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001208/0.05128, allocations: 0.5274 MB / 398.5 MB, free: 13.93 MB / 378.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.64e-05/0.05131, allocations: 31.72 kB / 398.5 MB, free: 13.9 MB / 378.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001663/0.05148, allocations: 349.2 kB / 398.9 MB, free: 13.41 MB / 378.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002478/0.05173, allocations: 408.6 kB / 399.3 MB, free: 12.86 MB / 378.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.765e-06/0.05173, allocations: 4 kB / 399.3 MB, free: 12.86 MB / 378.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0002883/0.05202, allocations: 317.1 kB / 399.6 MB, free: 12.54 MB / 378.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.644e-05/0.05203, allocations: 8 kB / 399.6 MB, free: 12.54 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.366e-06/0.05204, allocations: 8 kB / 399.6 MB, free: 12.53 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.567e-05/0.05206, allocations: 8 kB / 399.6 MB, free: 12.52 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001447/0.0522, allocations: 87.89 kB / 399.7 MB, free: 12.43 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.086e-05/0.05221, allocations: 16.5 kB / 399.7 MB, free: 12.42 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000115/0.05233, allocations: 43.67 kB / 399.7 MB, free: 12.38 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.514e-05/0.05235, allocations: 27.98 kB / 399.8 MB, free: 12.35 MB / 378.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.272e-05/0.05245, allocations: 188.3 kB / 399.9 MB, free: 12.15 MB / 378.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.711e-05/0.05248, allocations: 35.81 kB / 400 MB, free: 12.12 MB / 378.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002683/0.05275, allocations: 249.4 kB / 400.2 MB, free: 11.84 MB / 378.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.654e-06/0.05275, allocations: 4.031 kB / 400.2 MB, free: 11.84 MB / 378.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.462e-06/0.05275, allocations: 0 / 400.2 MB, free: 11.84 MB / 378.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.284e-06/0.05276, allocations: 0 / 400.2 MB, free: 11.84 MB / 378.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002593/0.05302, allocations: 492.7 kB / 400.7 MB, free: 11.32 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.077e-06/0.05302, allocations: 0 / 400.7 MB, free: 11.32 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 8.747e-06/0.05303, allocations: 7.984 kB / 400.7 MB, free: 11.31 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.635e-06/0.05303, allocations: 0 / 400.7 MB, free: 11.31 MB / 378.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.208e-06/0.05304, allocations: 4 kB / 400.7 MB, free: 11.3 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.332e-06/0.05304, allocations: 0 / 400.7 MB, free: 11.3 MB / 378.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.002e-06/0.05304, allocations: 0 / 400.7 MB, free: 11.3 MB / 378.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 6.658e-05/0.05311, allocations: 108.2 kB / 400.8 MB, free: 11.18 MB / 378.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 3.2e-05/0.05314, allocations: 43.72 kB / 400.9 MB, free: 11.13 MB / 378.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.165e-05/0.05316, allocations: 0 / 400.9 MB, free: 11.13 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.538e-05/0.05319, allocations: 0 / 400.9 MB, free: 11.13 MB / 378.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.338e-06/0.0532, allocations: 0 / 400.9 MB, free: 11.13 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.244e-06/0.05321, allocations: 4 kB / 400.9 MB, free: 11.13 MB / 378.7 MB
Notification: Performance of sorting global known variables: time 0.0001426/0.05335, allocations: 287 kB / 401.2 MB, free: 10.85 MB / 378.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.05335, allocations: 3.938 kB / 401.2 MB, free: 10.84 MB / 378.7 MB
Notification: Performance of remove unused functions: time 0.0003377/0.05369, allocations: 187.2 kB / 401.3 MB, free: 10.66 MB / 378.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0006158/0.0543, allocations: 322.5 kB / 401.7 MB, free: 10.34 MB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.0001433/0.05445, allocations: 125.3 kB / 401.8 MB, free: 10.21 MB / 378.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.654e-06/0.05445, allocations: 0 / 401.8 MB, free: 10.21 MB / 378.7 MB
Notification: Performance of simCode: created simulation system equations: time 7.584e-06/0.05445, allocations: 15.62 kB / 401.8 MB, free: 10.19 MB / 378.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002709/0.05473, allocations: 93.11 kB / 401.9 MB, free: 10.11 MB / 378.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0008637/0.05559, allocations: 0.5183 MB / 402.4 MB, free: 9.551 MB / 378.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.803e-05/0.05564, allocations: 100.6 kB / 402.5 MB, free: 9.434 MB / 378.7 MB
Notification: Performance of simCode: alias equations: time 0.0001442/0.05578, allocations: 78.34 kB / 402.6 MB, free: 9.363 MB / 378.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001338/0.05592, allocations: 146.1 kB / 402.7 MB, free: 9.219 MB / 378.7 MB
Notification: Performance of SimCode: time 9.22e-07/0.05592, allocations: 0 / 402.7 MB, free: 9.219 MB / 378.7 MB
Notification: Performance of Templates: time 0.00814/0.06406, allocations: 7.155 MB / 409.9 MB, free: 2.121 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.7431415249593556]